Gene detail

Detail information of GWHGAAZE020176

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010269705.1	1.38495E-97	PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera]
COG	YP_001658231.1	6E-10	RNA binding protein
Swissprot	tr\|Q9FMG4\|SC35_ARATH	0.00000002	Serine/arginine-rich splicing factor SC35
trEMBL	tr\|A0A067JH32\|A0A067JH32_JATCU	4E-91	Uncharacterized protein {ECO:0000313\|EMBL:KDP22118.1}
TAIR10	AT1G51510.1	2E-40	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	79372964	79380367	+
GWHAAZE00000005	mRNA	79372964	79380367	+
GWHAAZE00000005	exon	79372964	79373225	+
GWHAAZE00000005	exon	79376237	79376320	+
GWHAAZE00000005	exon	79376614	79376750	+
GWHAAZE00000005	exon	79379700	79379845	+
GWHAAZE00000005	exon	79380322	79380367	+
GWHAAZE00000005	CDS	79372964	79373225	+
GWHAAZE00000005	CDS	79376237	79376320	+
GWHAAZE00000005	CDS	79376614	79376750	+
GWHAAZE00000005	CDS	79379700	79379845	+
GWHAAZE00000005	CDS	79380322	79380367	+

Transcript Sequence
>GWHTAAZE020198 ATGGCGAACGCAGCAGCAGATGTGGAAGCTGTGGACTTTGAGCCCGAGGACGACGACCTCATGGACGAAGACGCTGCTGATGCCTCCCCCAGGTCTCATATCCCCAAGCTCAAGTCCGCCATCACCTCCGGCGGTGCTGCTGCCGCTAAGAAAACCAAAGGACGTGGTTTCCGTGAAGAGACCACCGATGCGGAGCGCAACAACCGCATGTCCGGACGCTTCGATTCCCTTGATTCTGAAGGCGGCCCTGGCCCTGAAAGATTAACACCTGGAATCATGTTTGGTAGTTCTGGGTCTTGGCCCCTTTTTGCCTTACGTGGTGCATTTGGAGTGAGCCAAATAAGAGCCATTGAAGGATGGATTATTCTCGTGACTGGAATTCATGAAGAAGCACAAGAGGATGACATTCAGAATGCATTTGGTGATTTTGGGGAGATGAAGAATCTGCACCTGAATCTTGATCGTAGAACTGGATTTGTTAAGGGGTATGCACTGATTGAATATGAGCACTTTGAAGAAGCAGAGAAAGCTATATCTGTAATGGATGGTGCTGAACTGCTCACACAAATTATCAGTGTTGATTGGGCATTCAGCAAAGGTCCCTTCAGAAGGAGGAATACCAGGAGGAGATCGCCACGTGGGCATCGTTCACGGAGTCCCAGGAGAAGGTTTTGA

Network for GWHGAAZE020176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	122	187	4.80E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12876	RBM8A, Y14	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003729	molecular_function	mRNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.305
	SRR3591706	second leaf	41.105
	SRR3591707	mature leaf	37.847
	SRR3591708	Shoot apex	83.144
	SRR3591709	Stem	47.159
	SRR3591710	White floral bud	67.446
	SRR3591711	White flower	54.847
	SRR3591712	Green floral bud	74.017
	SRR3591713	Yellow flower	48.612
SRP173429	SRR8316895	Juvenile bud stage	20.826
	SRR8316896	Juvenile bud stage	30.194
	SRR8316897	Juvenile bud stage	12.914
	SRR8316894	Third green stage	14.111
	SRR8316900	Third green stage	46.822
	SRR8316901	Third green stage	40.732
	SRR8316898	Complete white stage	14.607
	SRR8316899	Complete white stage	35.906
	SRR8316903	Complete white stage	20.991
	SRR8316902	Silver flowering stage	16.754
	SRR8316904	Silver flowering stage	18.022
	SRR8316905	Silver flowering stage	9.150
	SRR8316906	Gold flowering stage	28.928
	SRR8316907	Gold flowering stage	32.488
	SRR8316908	Gold flowering stage	30.658
SRP132670	SRR6706286	Control	42.807
	SRR6706287	Light intensity 50%	42.618
	SRR6706288	Light intensity 20%	44.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.584
	CNS0095593	Slightly white alabastrum(diploid) 2	46.508
	CNS0095594	Slightly white alabastrum(diploid) 3	48.295
	CNS0095595	Whole white alabastrum(diploid) 2	53.561
	CNS0095596	Whole white alabastrum(diploid) 3	68.030
	CNS0095597	Whole white alabastrum(diploid) 4	62.832
	CNS0095598	Silvery flower (diploied) 1	19.580
	CNS0095599	Silvery flower (diploied) 2	19.018
	CNS0095600	Silvery flower (diploied) 3	25.008
	CNS0095601	Golden flower (diploid) 1	25.914
	CNS0095602	Golden flower (diploid) 2	24.327
	CNS0095603	Golden flower (diploid) 3	23.865
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	75.075
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.945
	CNS0095607	Whole white alabastrum(tetraploid) 1	88.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.575
	CNS0095610	Silvery flower (tetraploid) 1	25.332
	CNS0095611	Silvery flower (tetraploid) 2	30.407
	CNS0095612	Silvery flower (tetraploid) 3	25.397
	CNS0095613	Golden flower (tetraploid) 1	19.796
	CNS0095614	Golden flower (tetraploid) 2	22.196
	CNS0095615	Golden flower (tetraploid) 3	30.594
CRA001975	CRR073297	Stem 1	41.643
	CRR073298	Stem 2	36.904
	CRR073299	Stem 3	39.053
	CRR073300	Leaf 1	45.834
	CRR073301	Leaf 2	47.280
	CRR073302	Leaf 3	41.546
	CRR073303	Juvenile bud 1	46.293
	CRR073304	Juvenile bud 2	35.013
	CRR073305	Juvenile bud 3	23.821
	CRR073306	Third green 1	20.516
	CRR073307	Third green 2	22.522
	CRR073308	Third green 3	23.329
	CRR073309	Second white 1	16.624
	CRR073310	Second white 2	19.654
	CRR073311	Second white 3	13.297
	CRR073312	Silver flowering 1	19.696
	CRR073313	Silver flowering 2	26.155
	CRR073314	Silver flowering 3	19.612
	CRR073315	Gold flowering 1	37.967
	CRR073316	Gold flowering 2	32.325
	CRR073317	Gold flowering 3	34.043
	CRR073318	Tawny withering 1	52.501
	CRR073319	Tawny withering 2	36.609
	CRR073320	Tawny withering 3	44.009