Gene detail

Detail information of GWHGAAZE020188

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278483.1	2.14588E-67	PREDICTED: squamosa promoter-binding-like protein 3 isoform X1 [Nelumbo nucifera]
Swissprot	tr\|A3A2Z8\|SPL3_ORYSJ	2E-48	Squamosa promoter-binding-like protein 3
trEMBL	tr\|F6H9P0\|F6H9P0_VITVI	7E-58	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48909.1}
TAIR10	AT1G27370.4	8E-29	squamosa promoter binding protein-like 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	79650770	79652363	+
GWHAAZE00000005	mRNA	79650770	79652363	+
GWHAAZE00000005	exon	79650770	79651359	+
GWHAAZE00000005	exon	79652192	79652363	+
GWHAAZE00000005	CDS	79650770	79651359	+
GWHAAZE00000005	CDS	79652192	79652363	+

Transcript Sequence
>GWHTAAZE020210 TTTGTGAGGTTGGTTTCTACGATGGAGGGGAAATCGAATACTCCACCAGAGTGGGAATGGGAAAATGCAGCTATTTACGGTAGTAGTGCGATTGAGATGGGTCGAGATTTAGTAGGAAATGGATCAACTTACTCATTGGCTGATGTGGGGTTCAGCTCTTCATCGAAGAACTCTATTTCTAGTTATGTGTGTCCCTTATCAAAAGACGGGACTAGGAATCTGGAGGGAATTGATGACGGGTTCACTTTAAAAGGTGGCGACTTCCAAATTCCCGGTCCTTCTTCTATTGGTTTGAAACTCGGTAGGCGTAATTACTTTGAAGAAAAGGGCATGTCCTTTTCTGTAATGCCGACATCTTCTTCTTCTTTGCCATCTACAAAGAGAGCGAAGGCATCTTATCAAAATACACAGGTGCCTCGTTGCCAAGTGGAAGGATGTAACCTCGACCTGGTTTCTGCAAAAGATTATCACCGTCGCCATAGAATCTGTGAAAGCCATTCAAAAAGCCCGAAGGTGATTGTAGCTGGATTGGACCGACGGTTCTGTCAACAGTGCAGCAGGCGAGTTTATTTTTTTTGTACTATAAACTTGTTCCATGATTTATCGGAGTTTGATGAGAGGAAGCGAAGTTGTCGTAGAAGGCTCTCCAATCACAATGCTAGACGTCGCCGGACGATGCCACAGCCAGAAGCCATCCAGTTCGTCTCTGCGCCAATATCTTCGTCATTATATGGTGCTCTTCTCAATTCTGCAAAAGATTAA

Network for GWHGAAZE020188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	141	224	3.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.312
	SRR3591706	second leaf	5.462
	SRR3591707	mature leaf	0.624
	SRR3591708	Shoot apex	12.655
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.270
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	0.332
	SRR3591713	Yellow flower	0.124
SRP173429	SRR8316895	Juvenile bud stage	2.492
	SRR8316896	Juvenile bud stage	1.629
	SRR8316897	Juvenile bud stage	1.056
	SRR8316894	Third green stage	0.393
	SRR8316900	Third green stage	0.409
	SRR8316901	Third green stage	0.493
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.136
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.018
	SRR6706287	Light intensity 50%	0.108
	SRR6706288	Light intensity 20%	0.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.208
	CNS0095593	Slightly white alabastrum(diploid) 2	0.084
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.846
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.078
	CNS0095598	Silvery flower (diploied) 1	0.353
	CNS0095599	Silvery flower (diploied) 2	0.283
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.049
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.682
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.798
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.513
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.131
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.237
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.584
	CRR073298	Stem 2	1.347
	CRR073299	Stem 3	3.404
	CRR073300	Leaf 1	0.593
	CRR073301	Leaf 2	0.271
	CRR073302	Leaf 3	0.167
	CRR073303	Juvenile bud 1	0.076
	CRR073304	Juvenile bud 2	0.153
	CRR073305	Juvenile bud 3	0.054
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.258
	CRR073308	Third green 3	0.572
	CRR073309	Second white 1	0.011
	CRR073310	Second white 2	0.388
	CRR073311	Second white 3	0.123
	CRR073312	Silver flowering 1	0.187
	CRR073313	Silver flowering 2	0.267
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.680
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000