Gene detail

Detail information of GWHGAAZE020206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006345243.1	3.63493E-97	PREDICTED: serine/threonine-protein kinase At5g01020-like isoform X2 [Solanum tuberosum]
COG	YP_007201433.1	6E-20	protein kinase family protein
Swissprot	tr\|Q8GXZ3\|Y5102_ARATH	1E-79	Serine/threonine-protein kinase At5g01020
trEMBL	tr\|M0ZT38\|M0ZT38_SOLTU	1E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400007504}
TAIR10	AT2G07180.2	5E-78	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	80213599	80216692	+
GWHAAZE00000005	mRNA	80213599	80216692	+
GWHAAZE00000005	exon	80213599	80213931	+
GWHAAZE00000005	exon	80214340	80214481	+
GWHAAZE00000005	exon	80214883	80215019	+
GWHAAZE00000005	exon	80215468	80215570	+
GWHAAZE00000005	exon	80216385	80216692	+
GWHAAZE00000005	CDS	80213599	80213931	+
GWHAAZE00000005	CDS	80214340	80214481	+
GWHAAZE00000005	CDS	80214883	80215019	+
GWHAAZE00000005	CDS	80215468	80215570	+
GWHAAZE00000005	CDS	80216385	80216692	+

Transcript Sequence
>GWHTAAZE020228 ATGCAAACAACCTACGTTGTGACTAATCTTTTTTCAGCTGGAACTTCAACAGAAGCAAATCCTATATCGCCAAATAACGAAAAAATTGATCCGGCAAATAATGATCTTCTTCGTATCTTTACATACGAAGAGCTAAGGAGGGCAACCAGGCAATTCCGGGCGAGACAAATTCTTGGAAGAGGTCGGTTTGGAATGGTTTATAAAGGAAAAATGGAAATGAAAGATAATTGCGGTTACCATACAATGCAAGTTGCCATTAAGGAGCTTTATCCCGAAAGAATATTCCAAAACAAGCGATATTGGATGGTATTTATTTACTTTCGCTATTTTCAAACTGAGGCCGAGGTAATTTATTTAGGAAATCTCCGACACCCGAATCTGGTGAAGCTAATTGGCTACTGTCTCGATGGCGAACATGGGTATTTGGTTTATGAATATATGGAATCTGGTAACCTCGATAAACTCCTTTTTCGTGAAGATGGAAAAACATTGAATTGGACAAGAAGAAAGAAGATTGCTTTGGATGTTGCAAAAGGATTCGCTTTTCTTGAGGCCCTGGAAAAACCTATCCTTTATCTCTATTTCAAGACCTCAAACATCTTGTTGGATAGGGATCTAAATGCAAAGCTTTCGGATAGTGGACTTCAAAAGAATGATGATTTGCGTGTTACAACGGGCGATTTAGGATACTGTCCTCCCGATTTTATAAGAACTGGGCGCTTAACGAATAAAACTAATGTATATGCATTCGGGGTGGTGCTACTTGAAATGCTGACCGGAAGGAGCGTCATTGACAAGACCAAGTCGCCTTTGTCCGTAGATTACCTGCTCAACTTTGCCCGCCCGTGCCTCAGCCAATACAACAAACTCCGGTCAATATTAGACCAGCGAATAGAGGGGCAATACAGTCGGGAAGATATACTGCCTGTGGCAGTTCTTGCTCTGAAATGCCTCAGCAAAGACCCGAAAGATAGGCCGCCCATGAACGAAGTTGTCAAAGCACTAGAAGCTGCCGGTTCTTGA

Network for GWHGAAZE020206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	55	335	1.40E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.597
	SRR3591711	White flower	0.278
	SRR3591712	Green floral bud	0.051
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.937
	SRR8316896	Juvenile bud stage	0.214
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.154
	SRR8316900	Third green stage	0.204
	SRR8316901	Third green stage	0.251
	SRR8316898	Complete white stage	0.089
	SRR8316899	Complete white stage	3.011
	SRR8316903	Complete white stage	0.584
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.820
	SRR8316907	Gold flowering stage	0.593
	SRR8316908	Gold flowering stage	0.179
SRP132670	SRR6706286	Control	0.115
	SRR6706287	Light intensity 50%	0.084
	SRR6706288	Light intensity 20%	0.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.821
	CNS0095593	Slightly white alabastrum(diploid) 2	0.607
	CNS0095594	Slightly white alabastrum(diploid) 3	0.991
	CNS0095595	Whole white alabastrum(diploid) 2	1.762
	CNS0095596	Whole white alabastrum(diploid) 3	0.146
	CNS0095597	Whole white alabastrum(diploid) 4	0.473
	CNS0095598	Silvery flower (diploied) 1	1.991
	CNS0095599	Silvery flower (diploied) 2	0.649
	CNS0095600	Silvery flower (diploied) 3	1.268
	CNS0095601	Golden flower (diploid) 1	2.582
	CNS0095602	Golden flower (diploid) 2	3.497
	CNS0095603	Golden flower (diploid) 3	3.333
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.865
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.186
	CNS0095610	Silvery flower (tetraploid) 1	0.168
	CNS0095611	Silvery flower (tetraploid) 2	0.593
	CNS0095612	Silvery flower (tetraploid) 3	0.192
	CNS0095613	Golden flower (tetraploid) 1	0.435
	CNS0095614	Golden flower (tetraploid) 2	0.968
	CNS0095615	Golden flower (tetraploid) 3	0.269
CRA001975	CRR073297	Stem 1	0.338
	CRR073298	Stem 2	0.051
	CRR073299	Stem 3	0.055
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.221
	CRR073302	Leaf 3	0.007
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.035
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.116
	CRR073310	Second white 2	0.467
	CRR073311	Second white 3	0.193
	CRR073312	Silver flowering 1	0.202
	CRR073313	Silver flowering 2	0.403
	CRR073314	Silver flowering 3	0.749
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000