Gene detail

Detail information of GWHGAAZE020207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006345242.1	7.4483E-101	PREDICTED: serine/threonine-protein kinase At5g01020-like isoform X1 [Solanum tuberosum]
COG	YP_003270695.1	1E-18	serine/threonine protein kinase
Swissprot	tr\|P43293\|NAK_ARATH	3E-83	Probable serine/threonine-protein kinase NAK
trEMBL	tr\|M0ZT37\|M0ZT37_SOLTU	3E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400007503}
TAIR10	AT2G07180.2	4E-78	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	80230367	80233725	+
GWHAAZE00000005	mRNA	80230367	80233725	+
GWHAAZE00000005	exon	80230367	80230394	+
GWHAAZE00000005	exon	80230676	80230944	+
GWHAAZE00000005	exon	80231378	80231519	+
GWHAAZE00000005	exon	80231927	80232060	+
GWHAAZE00000005	exon	80232507	80232609	+
GWHAAZE00000005	exon	80233415	80233725	+
GWHAAZE00000005	CDS	80230367	80230394	+
GWHAAZE00000005	CDS	80230676	80230944	+
GWHAAZE00000005	CDS	80231378	80231519	+
GWHAAZE00000005	CDS	80231927	80232060	+
GWHAAZE00000005	CDS	80232507	80232609	+
GWHAAZE00000005	CDS	80233415	80233725	+

Transcript Sequence
>GWHTAAZE020229 ATGGAGCTAGGGGTGAACTCAGGATTAGCTGGAACTTCAACAGAAGCAAATCCTAAATCACCAAATAACGAAAATATTGATCTGGCAAATAATAATCTTCTTCGTATCTTTACATACGAAGAGCTAAGGAGGGCAACCAGGCAATTCCAGGCGAGACGAGTTCTTGGAAGAGGTCGCTTTGGAATGGTTTATAAAGGAAAAATGGAAATGAAAGATAATTGCGGTTACCATACAATGCAAGTTGCCATTAGGGAGCTTAATCCCGAAAGAATATTCCAAAACAAGCAGTATTGGATGACTGAGGCCGAGGTAATTTATTTAGGAAATCTCCGACACCCGAATCTGGTGAAGCTAATTGGCTACTGTCTCGATGGCCAACATGGGTATTTGGTTTATGAATATATGGAATCTGGTAGCCTCGATAAACTCCTTTTTCGTGATGGTGAAACATTGAATTGGACAAGAAGAAAGAAGATTGTTTTGGATGTTGCAAAAGGATTCGCTTTTCTTCATGCCCTGGAAACACCTATCCTTTATCTCTATTTCAAGACCTCAAACATCTTGTTGGATACGGATCTAAATGCAAAGCTTTCGGATATTGGACTTCAAAAGAATGATGCTTTGCGTGTTACAATGGGCGATTTAGGATACTGTCCTCCCGATTTTATAAAAACTGGGTGCTTAACGAATAAAGCTAATGTATATGCATTCGGGGTGGTGCTACTTGAAATGCTGACCGGAAGGAGTGTCATTGACAAGACCAAGTCGCCTTTGTCCGTAGATTACAACCTGCTCAACTTTGCCCTCCCGTGCCTCAGCCAATACAACAAACTCCGGTCAATATTAGACCCGCGAATAGAGGGGCAATACAGTCGGGAAGATATACTGCCTGTGGCAGTTCTTGCTCTGAAATGCCTCAGCAAAGACCCGAAAGATAGGCCGCCCATGAACGAAGTTGTCAAAGCACTAGAAGCTGCCGGTTCTTGA

Network for GWHGAAZE020207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	50	321	2.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.692
	SRR3591711	White flower	1.282
	SRR3591712	Green floral bud	0.141
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.382
	SRR8316896	Juvenile bud stage	0.779
	SRR8316897	Juvenile bud stage	0.107
	SRR8316894	Third green stage	0.273
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.151
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.920
	SRR8316903	Complete white stage	0.157
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.356
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.042
	SRR6706287	Light intensity 50%	0.232
	SRR6706288	Light intensity 20%	0.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.949
	CNS0095593	Slightly white alabastrum(diploid) 2	0.003
	CNS0095594	Slightly white alabastrum(diploid) 3	0.294
	CNS0095595	Whole white alabastrum(diploid) 2	0.669
	CNS0095596	Whole white alabastrum(diploid) 3	0.021
	CNS0095597	Whole white alabastrum(diploid) 4	0.283
	CNS0095598	Silvery flower (diploied) 1	0.970
	CNS0095599	Silvery flower (diploied) 2	0.223
	CNS0095600	Silvery flower (diploied) 3	0.318
	CNS0095601	Golden flower (diploid) 1	0.420
	CNS0095602	Golden flower (diploid) 2	0.788
	CNS0095603	Golden flower (diploid) 3	0.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.054
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.319
	CNS0095610	Silvery flower (tetraploid) 1	0.478
	CNS0095611	Silvery flower (tetraploid) 2	1.215
	CNS0095612	Silvery flower (tetraploid) 3	0.598
	CNS0095613	Golden flower (tetraploid) 1	0.383
	CNS0095614	Golden flower (tetraploid) 2	0.318
	CNS0095615	Golden flower (tetraploid) 3	0.409
CRA001975	CRR073297	Stem 1	0.150
	CRR073298	Stem 2	0.173
	CRR073299	Stem 3	0.057
	CRR073300	Leaf 1	0.025
	CRR073301	Leaf 2	0.330
	CRR073302	Leaf 3	0.214
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.108
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000