Gene detail

Detail information of GWHGAAZE020208

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006345242.1	2.0617E-99	PREDICTED: serine/threonine-protein kinase At5g01020-like isoform X1 [Solanum tuberosum]
COG	YP_007201433.1	5E-21	protein kinase family protein
Swissprot	tr\|Q8GXZ3\|Y5102_ARATH	6E-81	Serine/threonine-protein kinase At5g01020
trEMBL	tr\|M0ZT38\|M0ZT38_SOLTU	6E-100	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400007504}
TAIR10	AT2G07180.2	1E-77	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	80245738	80249842	+
GWHAAZE00000005	mRNA	80245738	80249842	+
GWHAAZE00000005	exon	80245738	80245858	+
GWHAAZE00000005	exon	80246830	80247098	+
GWHAAZE00000005	exon	80247532	80247673	+
GWHAAZE00000005	exon	80248078	80248214	+
GWHAAZE00000005	exon	80248638	80248740	+
GWHAAZE00000005	exon	80249532	80249842	+
GWHAAZE00000005	CDS	80245738	80245858	+
GWHAAZE00000005	CDS	80246830	80247098	+
GWHAAZE00000005	CDS	80247532	80247673	+
GWHAAZE00000005	CDS	80248078	80248214	+
GWHAAZE00000005	CDS	80248638	80248740	+
GWHAAZE00000005	CDS	80249532	80249842	+

Transcript Sequence
>GWHTAAZE020230 ATGTTGGTTGGGTGGATACTGGATTCAAATCCAAGCACATGTGTAAACAAGAGGTTCAGGGTTTTCAATGCAAAATCCGCGTTGGGTTGGTGTGAGCCAGACGTACCTTTAGCCTGGTCAGCTGGAACTTCAACAGAAGCAAATCCTAAATCGCCAAATAACGAAAATATTGATCTGGCAAATAATAATCTTCTTCGTATCTTTACATACAAAGAGCTAAGGAGGGCAACCAGGCAATTCCAGGCGAGACAAGTTCTTGGAAGAGATCGGTTTGGAATGGTTTATAAAGGAAAAATGGAAATGAAAGATAATTGCGGTTACCATACAATGCAAGTTGCCATTAGGGAGCTTAATCCCGAAAGAATATTCCAAAACAAGCAGTATTGGATGACTGAGGCCGAGGTAATTTATTTAGGAAATCTCCGACACCCGAATCTGGTGAAGCTAATCGGCTACTGTCTCGATGGCCAACATGGGTATTTGGTTTATGAATATATGGAATCTGGTAGCCTCGATAAACTCCTTTTTCGTGAAGATGGTGAAACATTGAATTGGACAAGAAGAAAGAAGATTGCTATGGATGTTGCAAAAGGATTCGCTTTTCTTCATGCCCTGGAAACACCTATCCTTTATCGCTATTTCAAGACCTCAAACATCTTGTTGGATAAGGATCTAAATGCAAAGCTTTCGGATATTGGAATTCAAAAGAATGATGCTTTGTGTGTTACAATGGGCGATTTAGGATACTGTTCTCCTGATTATATAAGAACTGGGCGCTTAACGAATAAAACTAATGTATATGCATTCGGGGTGGTGCTACTTGAAATGCTGACCGGAAGGAGCGTCATTGACAAGACCAAGACGCCTTTGTCCATAGATTACAACCTGCTCAACTTTGCCCTCCCGTGCCTCAGCCAATACAACAAACTCCAGTCAATATTAGACCGGCAAATAGAGGGGCAATACAGTCGGGAAGATATACTCCCTGTGGCAGTTCTTGCTCTGAAATGCCTCAGCAAAGACCCAAAAGATAGGCCGCCCATGAACGAAGTTGTCAAAGCACTAGAAGCTGCCGGTTCTTGA

Network for GWHGAAZE020208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	82	355	2.40E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.517
	SRR3591711	White flower	0.860
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.244
	SRR8316896	Juvenile bud stage	0.077
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.171
	SRR8316900	Third green stage	0.314
	SRR8316901	Third green stage	0.055
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.560
	SRR8316903	Complete white stage	1.251
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.195
	SRR8316907	Gold flowering stage	0.265
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.260
	SRR6706287	Light intensity 50%	0.231
	SRR6706288	Light intensity 20%	0.155
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.746
	CNS0095593	Slightly white alabastrum(diploid) 2	1.108
	CNS0095594	Slightly white alabastrum(diploid) 3	1.994
	CNS0095595	Whole white alabastrum(diploid) 2	1.728
	CNS0095596	Whole white alabastrum(diploid) 3	0.188
	CNS0095597	Whole white alabastrum(diploid) 4	0.305
	CNS0095598	Silvery flower (diploied) 1	2.053
	CNS0095599	Silvery flower (diploied) 2	0.952
	CNS0095600	Silvery flower (diploied) 3	1.113
	CNS0095601	Golden flower (diploid) 1	2.234
	CNS0095602	Golden flower (diploid) 2	2.431
	CNS0095603	Golden flower (diploid) 3	2.880
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.730
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.798
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.177
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.461
	CNS0095610	Silvery flower (tetraploid) 1	0.637
	CNS0095611	Silvery flower (tetraploid) 2	0.752
	CNS0095612	Silvery flower (tetraploid) 3	0.481
	CNS0095613	Golden flower (tetraploid) 1	0.363
	CNS0095614	Golden flower (tetraploid) 2	0.825
	CNS0095615	Golden flower (tetraploid) 3	0.063
CRA001975	CRR073297	Stem 1	0.127
	CRR073298	Stem 2	0.158
	CRR073299	Stem 3	0.234
	CRR073300	Leaf 1	0.137
	CRR073301	Leaf 2	0.451
	CRR073302	Leaf 3	0.244
	CRR073303	Juvenile bud 1	0.464
	CRR073304	Juvenile bud 2	0.069
	CRR073305	Juvenile bud 3	0.340
	CRR073306	Third green 1	0.079
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.105
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.390
	CRR073312	Silver flowering 1	0.044
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	1.222
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000