Gene detail

Detail information of GWHGAAZE020211

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006453168.1	0	hypothetical protein CICLE_v10007532mg [Citrus clementina]
COG	YP_004346025.1	9E-162	squalene/oxidosqualene cyclase
Swissprot	tr\|Q8W3Z4\|CAS1_BETPL	0	Cycloartenol synthase
trEMBL	tr\|V4U0P4\|V4U0P4_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR66408.1}
TAIR10	AT2G07050.1	0	cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	80300546	80315399	+
GWHAAZE00000005	mRNA	80300546	80315399	+
GWHAAZE00000005	exon	80300546	80300746	+
GWHAAZE00000005	exon	80302637	80302721	+
GWHAAZE00000005	exon	80304989	80305155	+
GWHAAZE00000005	exon	80305761	80305949	+
GWHAAZE00000005	exon	80306334	80306447	+
GWHAAZE00000005	exon	80306804	80306929	+
GWHAAZE00000005	exon	80307081	80307203	+
GWHAAZE00000005	exon	80308688	80308744	+
GWHAAZE00000005	exon	80308961	80309007	+
GWHAAZE00000005	exon	80309408	80309551	+
GWHAAZE00000005	exon	80310168	80310272	+
GWHAAZE00000005	exon	80312193	80312370	+
GWHAAZE00000005	exon	80313012	80313092	+
GWHAAZE00000005	exon	80313302	80313385	+
GWHAAZE00000005	exon	80315271	80315399	+
GWHAAZE00000005	CDS	80300546	80300746	+
GWHAAZE00000005	CDS	80302637	80302721	+
GWHAAZE00000005	CDS	80304989	80305155	+
GWHAAZE00000005	CDS	80305761	80305949	+
GWHAAZE00000005	CDS	80306334	80306447	+
GWHAAZE00000005	CDS	80306804	80306929	+
GWHAAZE00000005	CDS	80307081	80307203	+
GWHAAZE00000005	CDS	80308688	80308744	+
GWHAAZE00000005	CDS	80308961	80309007	+
GWHAAZE00000005	CDS	80309408	80309551	+
GWHAAZE00000005	CDS	80310168	80310272	+
GWHAAZE00000005	CDS	80312193	80312370	+
GWHAAZE00000005	CDS	80313012	80313092	+
GWHAAZE00000005	CDS	80313302	80313385	+
GWHAAZE00000005	CDS	80315271	80315399	+

Transcript Sequence
>GWHTAAZE020233 ATGCAGAATGAGGATGGAGGGTGGGGATTACATATAGAGGGGCGTAGCATAATGTTCGGTACATCTCTCAATTACGTCACCCTCAGATTGCTTGGTGAAAAAATGGACGGTGGTGATGGGGCCATTTCCAAAGCTAGGAAGTGGATTCTTGATCATGGTGGGGCCACCTACATTCCATCCTGGGGAAAACTCTGGCTCTCGGTGTTGGGAGTATACGAATGGAGTGGGAACAATCCTCTTCCACCAGAGATATGGCTTCTTCCTTACATTCTTCCCTTTCACCCAGGACGTATGTGGTGCCACACTCGGATGGTGTACCTGCCTATGTCGTATTTATACGGGAAGAGGTTCGTAGGACCGATAAATTCCACTGTTTTATCACTAAGGAGAGAGCTGTATACACAGCCCTATGATCAAATCGACTGGGACTTGGCTAGAAATCAATGTGCTAAGGAAGATCTATATTGCCCACATCCACTAATACAAGACATCCTTTGGGGTGGCCTACACAAGTTTGCGGAACCTCTTCTAAGGAAATGGCCCTTCTCTAAGCTAAGGCACAAAGCACTCAATACTGTAATGCAACATATCCATCATGAAGATGAAAACACTCACTATATCTGCCTTGGACCCGTCGATAAGGTACTAAACATGGTTTGTTGTTGGGTTGAGGATCCAAATTCAATGGCAAATAAATTCCACCTTTCAAGGATAAAAGATTACTTGTGGGTGGCTGAAGACGGCATGAAAATGCAGGGATATAATGGATCTCAGTTATGGGATGTTGTTTTTGCTGTTCAAGCAACACTTGCCACCAACATCACTGATGATGAATATGGTTCAGTGCTTAGAAAAGCACATAATTTTATTAAAGTCTCACAGGTCAAGGAAAACAGCTCTAGCGATCTTAGTTTTTGGTATCGGCACATTTCTAAGGGGGGATGGACTTTCTCAACGTGGGAAAATGGTTGGCCCGTTTCGGATTGCACTGCAGAAGGTTTGAAGAACAGTAATGGAGGTTTTGCATCATATGAGCCCACAAGATCTTACCCTTGGCTTGAGATGATCAATCCGGTTGAACTATTCGGGGATGTAATGATTGATTATCAGTACGTAGAGTGCACATCTTCAGCAATTCAAGGCCTTGGCATGTTTATGAAATTGCATCCAGGACATAGGCAGAGAGAAATCGAAGCATGTATTGCAAAAGCCCTTGATTTCATTCAGACCATACAATTACCTGATGGCTCATGCTATCCGATTAGTGTTTGGAAGAAAGTTTTCTCCAATTGCCCTTCGGTTGCTACTTTAATGCCAACTGCTTCAATGGTCTTGGTTTGTGGTGCATTGTTCTATAGGTATGGATCTTGGGGAATATGCTACAATTATGGGACTTGGTTTGGAATTAAGGGGTTAATAGCTGGTGGTAAGAATTACCAAAATAACCCTAGCATAAGAAGAGCTTGTGATTTCCTATTATCCAAACAACTTGATTCCGGTGGTTGGGGAGAAAGTTATCTTTCTTGCCAAGATAAGGTATACACAAATATAGAAGGAAACAAATCACATATAGTAAGCACTGCTTGGGCTATGATGGCTCTTATAGAAGCTGGGCAGGCCAAGAGAGATCCAACTCCCCTTCATCGTGCAGCGAAAGTGTTGATCAATTCTCAGATGAAAAATGGAGACTTTCCACAACAGGAGATAATTGGAGTGTTCAATAAGAATTGTATGATAAGTTATTCAGCCTACAGAAACATCTTTCCTATATGGGCTCTCGGAGAATATCTCAATCATGTATTACCACTCTCATCCCCCTTGGATGTATAA

Network for GWHGAAZE020211

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	2	204	1.50E-32
PF13243.7	SQHop_cyclase_C	454	597	3.10E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01853	CAS1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.021
	SRR3591706	second leaf	0.054
	SRR3591707	mature leaf	0.175
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	1.469
	SRR3591710	White floral bud	0.070
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.035
	SRR3591713	Yellow flower	1.687
SRP173429	SRR8316895	Juvenile bud stage	0.301
	SRR8316896	Juvenile bud stage	0.479
	SRR8316897	Juvenile bud stage	0.057
	SRR8316894	Third green stage	0.127
	SRR8316900	Third green stage	0.259
	SRR8316901	Third green stage	0.384
	SRR8316898	Complete white stage	0.140
	SRR8316899	Complete white stage	0.470
	SRR8316903	Complete white stage	0.369
	SRR8316902	Silver flowering stage	0.103
	SRR8316904	Silver flowering stage	0.107
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.262
	SRR8316907	Gold flowering stage	0.955
	SRR8316908	Gold flowering stage	0.105
SRP132670	SRR6706286	Control	0.236
	SRR6706287	Light intensity 50%	0.197
	SRR6706288	Light intensity 20%	0.170
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.762
	CNS0095593	Slightly white alabastrum(diploid) 2	0.972
	CNS0095594	Slightly white alabastrum(diploid) 3	0.408
	CNS0095595	Whole white alabastrum(diploid) 2	0.730
	CNS0095596	Whole white alabastrum(diploid) 3	0.440
	CNS0095597	Whole white alabastrum(diploid) 4	0.366
	CNS0095598	Silvery flower (diploied) 1	0.289
	CNS0095599	Silvery flower (diploied) 2	0.224
	CNS0095600	Silvery flower (diploied) 3	0.122
	CNS0095601	Golden flower (diploid) 1	0.070
	CNS0095602	Golden flower (diploid) 2	0.158
	CNS0095603	Golden flower (diploid) 3	0.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.438
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.267
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.092
	CNS0095610	Silvery flower (tetraploid) 1	0.149
	CNS0095611	Silvery flower (tetraploid) 2	0.350
	CNS0095612	Silvery flower (tetraploid) 3	0.744
	CNS0095613	Golden flower (tetraploid) 1	0.210
	CNS0095614	Golden flower (tetraploid) 2	0.264
	CNS0095615	Golden flower (tetraploid) 3	0.455
CRA001975	CRR073297	Stem 1	0.093
	CRR073298	Stem 2	0.024
	CRR073299	Stem 3	0.057
	CRR073300	Leaf 1	0.011
	CRR073301	Leaf 2	0.092
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.011
	CRR073304	Juvenile bud 2	0.010
	CRR073305	Juvenile bud 3	0.119
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.049
	CRR073308	Third green 3	0.093
	CRR073309	Second white 1	0.101
	CRR073310	Second white 2	0.245
	CRR073311	Second white 3	0.048
	CRR073312	Silver flowering 1	0.237
	CRR073313	Silver flowering 2	0.384
	CRR073314	Silver flowering 3	0.083
	CRR073315	Gold flowering 1	0.189
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	1.100
	CRR073319	Tawny withering 2	1.188
	CRR073320	Tawny withering 3	0.588