Detail information of GWHGAAZE020246


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009788902.18.64399E-11PREDICTED: F-box only protein 8-like [Nicotiana sylvestris]
Swissprottr|Q9C629|FB35_ARATH0.0000002Putative F-box protein At1g46840
trEMBLtr|A0A067EF73|A0A067EF73_CITSI4E-10Uncharacterized protein {ECO:0000313|EMBL:KDO53824.1}
TAIR10AT1G46840.10.000001F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene8134994681350598-
GWHAAZE00000005mRNA8134994681350598-
GWHAAZE00000005exon8134994681349984-
GWHAAZE00000005exon8135009581350598-
GWHAAZE00000005CDS8135009581350598-
GWHAAZE00000005CDS8134994681349984-
Transcript Sequence

Network for GWHGAAZE020246

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box12541.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.050
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.323
SRR3591712Green floral bud0.100
SRR3591713Yellow flower0.341
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.180
SRR8316897Juvenile bud stage 0.070
SRR8316894Third green stage 0.107
SRR8316900Third green stage 0.384
SRR8316901Third green stage 0.348
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.163
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.259
SRR8316904Silver flowering stage0.017
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.081
SRR6706287Light intensity 50%0.038
SRR6706288Light intensity 20%0.033
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.068
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.172
CNS0095595Whole white alabastrum(diploid) 20.184
CNS0095596Whole white alabastrum(diploid) 30.104
CNS0095597Whole white alabastrum(diploid) 40.169
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.022
CNS0095600Silvery flower (diploied) 30.031
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.013
CNS0095604Slightly white alabastrum(tetraploid) 11.215
CNS0095605Slightly white alabastrum(tetraploid) 21.206
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.606
CNS0095608Whole white alabastrum(tetraploid) 20.796
CNS0095609Whole white alabastrum(tetraploid) 30.731
CNS0095610Silvery flower (tetraploid) 10.058
CNS0095611Silvery flower (tetraploid) 20.071
CNS0095612Silvery flower (tetraploid) 30.190
CNS0095613Golden flower (tetraploid) 10.075
CNS0095614Golden flower (tetraploid) 20.289
CNS0095615Golden flower (tetraploid) 30.090
CRA001975CRR073297Stem 10.070
CRR073298Stem 20.073
CRR073299Stem 30.085
CRR073300Leaf 10.097
CRR073301Leaf 20.000
CRR073302Leaf 30.020
CRR073303Juvenile bud 10.211
CRR073304Juvenile bud 20.276
CRR073305Juvenile bud 30.000
CRR073306Third green 10.016
CRR073307Third green 20.000
CRR073308Third green 30.118
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.237
CRR073312Silver flowering 10.053
CRR073313Silver flowering 20.098
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.294
CRR073316Gold flowering 20.011
CRR073317Gold flowering 30.037
CRR073318Tawny withering 10.664
CRR073319Tawny withering 20.122
CRR073320Tawny withering 30.028