Gene detail

Detail information of GWHGAAZE020257

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09363.1	0	unnamed protein product [Coffea canephora]
COG	YP_006918135.1	1E-12	hypothetical protein M5M_16375
Swissprot	tr\|F4HVY0\|CER1_ARATH	0	Protein ECERIFERUM 1
trEMBL	tr\|A0A068UP14\|A0A068UP14_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09363.1}
TAIR10	AT1G02205.2	4E-156	Fatty acid hydroxylase superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	82225101	82229201	+
GWHAAZE00000005	mRNA	82225101	82229201	+
GWHAAZE00000005	exon	82225101	82225287	+
GWHAAZE00000005	exon	82225377	82225596	+
GWHAAZE00000005	exon	82226662	82227037	+
GWHAAZE00000005	exon	82227141	82227221	+
GWHAAZE00000005	exon	82227614	82227814	+
GWHAAZE00000005	exon	82228625	82228798	+
GWHAAZE00000005	exon	82229028	82229201	+
GWHAAZE00000005	CDS	82225101	82225287	+
GWHAAZE00000005	CDS	82225377	82225596	+
GWHAAZE00000005	CDS	82226662	82227037	+
GWHAAZE00000005	CDS	82227141	82227221	+
GWHAAZE00000005	CDS	82227614	82227814	+
GWHAAZE00000005	CDS	82228625	82228798	+
GWHAAZE00000005	CDS	82229028	82229201	+

Transcript Sequence
>GWHTAAZE020279 ATGACAGTGGCCGGAGCTTCTAACTTACCCTTGTGGAGAACAAATGGTATTATAATCACAATATTGCTTCATAGTGGACCAGTGGAGTTTCTTTATTATTGGCTTCATAAGGCATTGCATCACAACTATCTCTACTCTCGCTACCATTCCCACCACCATTCCTCTATTGCTACCGAGCCCATTTCATCTGTTGTACATCCATTTCTTGAGCTTGGAGCATATTTTGTGCTATTTGCAATACCAATGGTGACCACAGCCCTCACCAATACAACCTCTTTGGTGGGAATATTTGGTTACGTAACGTATATTGATTTCATGAACTTGATGGGACACTGCAATTTTGAGATGATACCAAACAAGTTCTTCTCCATTTTCCCACCTCTCAAATTCTTGATGTATACACCAACATTTCACTCTCTTCATCACACCCAGTTCCGAACCAACTACTCATTATTCATGCCATTTTATGATTACGTTTACGGAACCACGGATGAGTCTACTGATACATTACATGAAGCATCACTTAAGAGACTAGAAGACTCGCCTGACGTAGTCCATCTCACACATCTAACTACACCAGATTCCATGTATCATCAACGGCTAGGGTTTCACTCCATTTCTTCGAAGCCTCACATGTCCAAGTGGTATCTACTGCTAGTGTGGCCTTTCACACGTTTCTTCATGGCAATGATTTCCATATGCGGCCGTACATTCGTTTCAGAGAGGAATATCTTTCAAAATCTCAAACTACAGTCATGGACACTACCAATATATAATAGACAATATTTATTGGGATGGAAAAAGAAAGCTATCAATCGCCTAATTGAAGAGGCCATACTAGATGCAGAGGCAAGAGGCACTAAGGGGGAGGAACTGAACAGAAATGGAGAGGTTTATATAAAAAGGTACCCTAAGTTAAAAGTGAAGGTAGTGGATGGGAGTAGTTTGGCAGCTGCTATTGTGATTAACACCATTCCAAAAGGAACAAAACAAGTCCTCCTTCGAGGAAAAATCTCTAAAACTTCTTGTGCAATTGCCTTTGCTTTGTGTCAAAGGGGTATCCAGGTATGGTTAGTGGGGGAGGGATTGGAAGAAGAAGAACAAGACAAGGCAGCAAAGGGAACAATATTCATTCCATTCTCAACTTTTCCCCCAAAAAAGATTAGGAATGATTGCTTTTACCACTACACACCAGCTATGTTAACTCCTCTCAATCTCAAAAACATGCACACTTGTGAGAATTGGTTGCCCAGAAAAGTGATGAGTGCTTCACGTGTGGCCGGAATAGTGCACGCATTAGAAGGATGGGAGGAACACAAGTGCAGGGACACCATCTTCAACCTTGACAAAGTTTGGCAAACCACTCTTAAGCATGGCTTCCAACCTCTTGATTATGGACGACAAATGGTTTAA

Network for GWHGAAZE020257

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	28	162	4.30E-20
PF12076.9	Wax2_C	355	462	2.20E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15404	K15404, CER1	Biosynthesis of secondary metabolites	map01110
K15404	K15404, CER1	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.153
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.079
	SRR3591709	Stem	0.078
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.270
	SRR8316897	Juvenile bud stage	0.397
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.035
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	9.582
	SRR8316899	Complete white stage	0.132
	SRR8316903	Complete white stage	21.239
	SRR8316902	Silver flowering stage	166.198
	SRR8316904	Silver flowering stage	263.484
	SRR8316905	Silver flowering stage	140.367
	SRR8316906	Gold flowering stage	370.368
	SRR8316907	Gold flowering stage	371.635
	SRR8316908	Gold flowering stage	265.888
SRP132670	SRR6706286	Control	0.632
	SRR6706287	Light intensity 50%	1.059
	SRR6706288	Light intensity 20%	0.093
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.575
	CNS0095593	Slightly white alabastrum(diploid) 2	0.429
	CNS0095594	Slightly white alabastrum(diploid) 3	0.436
	CNS0095595	Whole white alabastrum(diploid) 2	0.500
	CNS0095596	Whole white alabastrum(diploid) 3	0.167
	CNS0095597	Whole white alabastrum(diploid) 4	1.538
	CNS0095598	Silvery flower (diploied) 1	132.647
	CNS0095599	Silvery flower (diploied) 2	127.360
	CNS0095600	Silvery flower (diploied) 3	189.982
	CNS0095601	Golden flower (diploid) 1	124.199
	CNS0095602	Golden flower (diploid) 2	150.711
	CNS0095603	Golden flower (diploid) 3	155.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.660
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.171
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.995
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.542
	CNS0095610	Silvery flower (tetraploid) 1	440.561
	CNS0095611	Silvery flower (tetraploid) 2	253.187
	CNS0095612	Silvery flower (tetraploid) 3	881.667
	CNS0095613	Golden flower (tetraploid) 1	685.471
	CNS0095614	Golden flower (tetraploid) 2	428.531
	CNS0095615	Golden flower (tetraploid) 3	588.980
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.052
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.072
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.015
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	12.476
	CRR073307	Third green 2	6.066
	CRR073308	Third green 3	12.769
	CRR073309	Second white 1	11.521
	CRR073310	Second white 2	35.753
	CRR073311	Second white 3	18.698
	CRR073312	Silver flowering 1	10.580
	CRR073313	Silver flowering 2	10.892
	CRR073314	Silver flowering 3	14.407
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000