Gene detail

Detail information of GWHGAAZE020283

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP43309.1	2.73819E-14	hypothetical protein JCGZ_24230 [Jatropha curcas]
Swissprot	tr\|Q7XTT4\|NUCL2_ORYSJ	2E-11	Nucleolin 2
trEMBL	tr\|A0A067LGM1\|A0A067LGM1_JATCU	1E-14	Uncharacterized protein {ECO:0000313\|EMBL:KDP43309.1}
TAIR10	AT3G18610.1	0.0005	nucleolin like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	82928690	82933421	+
GWHAAZE00000005	mRNA	82928690	82933421	+
GWHAAZE00000005	exon	82928690	82928748	+
GWHAAZE00000005	exon	82928844	82928955	+
GWHAAZE00000005	exon	82932497	82932637	+
GWHAAZE00000005	exon	82932950	82933071	+
GWHAAZE00000005	exon	82933169	82933421	+
GWHAAZE00000005	CDS	82928690	82928748	+
GWHAAZE00000005	CDS	82928844	82928955	+
GWHAAZE00000005	CDS	82932497	82932637	+
GWHAAZE00000005	CDS	82932950	82933071	+
GWHAAZE00000005	CDS	82933169	82933421	+

Transcript Sequence
>GWHTAAZE020305 CTTCCAAGGGTGAGAGTTCACTTGGGAAATTTAGCTGAAAACACCCAAACATCTGACGTGGGGGCATTCTTTCCTATGGCCACTCTAGTTGACCTTAAATTTGAAGAAGAGAGTAACATATGCAAGGGGTTTGGATTCCTTGAATTTAAGACAAAAAAAGTTGCAGAGAAGGCCCTCAAGAAGAATGGCCAAATTTTGAATGGTAATGTTATTGCTCTCAAGTTGGTGGGAGAGGAAAATGTGGAACTGCCATTCCAACAAGGTCATGTGATAGGAGTACTAGACTTCCAGGTTAATGACACTTTGCCACAGGATTTAGTCTCACTCTACTTTAAAGTGCAGATTCGTCAGAGATTGGAAGCACATTTTGAGAAATGTGGACCAATCAAACAACTTTTTCTCCCACCGAACTTAAATTTACAGAATTATGAAGGGACTGCCTACATTGAATTCGAAGATTATGAGGGATTTAAAAAGGCTTTTCATCAGAAATATGCACTTCCGCTCCCGGGAGATTCAGGGTTTCTCAAAATCATCCGGCCAAAATTTGAGGAGATGCCCTTCCTACGCGGTATGGGAGGTGGAAGGGGTGGCAAATGGGGCTACGAAGATGCTAACGGCTTCATTGAGGATGATCTTCCCCAGGATCCGACTAGGCATATGGGTACAGGTGAGCATTCTTTTTGA

Network for GWHGAAZE020283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	71	1.10E-06
PF00076.23	RRM_1	117	163	4.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.917
	SRR8316896	Juvenile bud stage	4.445
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	2.216
	SRR8316900	Third green stage	4.389
	SRR8316901	Third green stage	4.848
	SRR8316898	Complete white stage	0.224
	SRR8316899	Complete white stage	3.922
	SRR8316903	Complete white stage	0.498
	SRR8316902	Silver flowering stage	0.692
	SRR8316904	Silver flowering stage	1.018
	SRR8316905	Silver flowering stage	0.746
	SRR8316906	Gold flowering stage	3.747
	SRR8316907	Gold flowering stage	1.296
	SRR8316908	Gold flowering stage	0.220
SRP132670	SRR6706286	Control	4.044
	SRR6706287	Light intensity 50%	3.871
	SRR6706288	Light intensity 20%	4.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.812
	CNS0095593	Slightly white alabastrum(diploid) 2	4.411
	CNS0095594	Slightly white alabastrum(diploid) 3	3.722
	CNS0095595	Whole white alabastrum(diploid) 2	3.936
	CNS0095596	Whole white alabastrum(diploid) 3	4.408
	CNS0095597	Whole white alabastrum(diploid) 4	5.494
	CNS0095598	Silvery flower (diploied) 1	1.518
	CNS0095599	Silvery flower (diploied) 2	3.262
	CNS0095600	Silvery flower (diploied) 3	2.442
	CNS0095601	Golden flower (diploid) 1	5.177
	CNS0095602	Golden flower (diploid) 2	3.030
	CNS0095603	Golden flower (diploid) 3	4.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.006
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.596
	CRR073298	Stem 2	4.977
	CRR073299	Stem 3	1.944
	CRR073300	Leaf 1	4.336
	CRR073301	Leaf 2	3.217
	CRR073302	Leaf 3	2.465
	CRR073303	Juvenile bud 1	2.228
	CRR073304	Juvenile bud 2	0.578
	CRR073305	Juvenile bud 3	3.341
	CRR073306	Third green 1	0.106
	CRR073307	Third green 2	0.146
	CRR073308	Third green 3	0.410
	CRR073309	Second white 1	0.926
	CRR073310	Second white 2	0.571
	CRR073311	Second white 3	1.405
	CRR073312	Silver flowering 1	0.312
	CRR073313	Silver flowering 2	0.119
	CRR073314	Silver flowering 3	0.417
	CRR073315	Gold flowering 1	2.630
	CRR073316	Gold flowering 2	1.203
	CRR073317	Gold flowering 3	0.177
	CRR073318	Tawny withering 1	1.790
	CRR073319	Tawny withering 2	3.251
	CRR073320	Tawny withering 3	1.334