Detail information of GWHGAAZE020306


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004237753.12.28368E-35PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprottr|Q9SU30|CPR30_ARATH4E-13F-box protein CPR30
trEMBLtr|K4BT34|K4BT34_SOLLC1E-35Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g063440.1.1}
TAIR10AT3G06240.15E-10F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene8359032583591908+
GWHAAZE00000005mRNA8359032583591908+
GWHAAZE00000005exon8359032583591908+
GWHAAZE00000005CDS8359032583591908+
Transcript Sequence

Network for GWHGAAZE020306

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box12541.50E-08
PF07734.14FBA_13294691.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.381
SRR3591706second leaf2.660
SRR3591707mature leaf2.911
SRR3591708Shoot apex2.541
SRR3591709Stem5.285
SRR3591710White floral bud6.047
SRR3591711White flower4.525
SRR3591712Green floral bud5.865
SRR3591713Yellow flower2.462
SRP173429 SRR8316895Juvenile bud stage 8.551
SRR8316896Juvenile bud stage 11.247
SRR8316897Juvenile bud stage 1.093
SRR8316894Third green stage 5.130
SRR8316900Third green stage 14.909
SRR8316901Third green stage 12.241
SRR8316898Complete white stage 5.679
SRR8316899Complete white stage 16.394
SRR8316903Complete white stage 10.263
SRR8316902Silver flowering stage4.427
SRR8316904Silver flowering stage6.589
SRR8316905Silver flowering stage2.392
SRR8316906Gold flowering stage 8.269
SRR8316907Gold flowering stage 8.620
SRR8316908Gold flowering stage 2.997
SRP132670SRR6706286Control8.514
SRR6706287Light intensity 50%9.197
SRR6706288Light intensity 20%8.964
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.446
CNS0095593Slightly white alabastrum(diploid) 212.597
CNS0095594Slightly white alabastrum(diploid) 310.673
CNS0095595Whole white alabastrum(diploid) 213.876
CNS0095596Whole white alabastrum(diploid) 312.746
CNS0095597Whole white alabastrum(diploid) 415.233
CNS0095598Silvery flower (diploied) 111.720
CNS0095599Silvery flower (diploied) 211.942
CNS0095600Silvery flower (diploied) 315.772
CNS0095601Golden flower (diploid) 18.944
CNS0095602Golden flower (diploid) 215.813
CNS0095603Golden flower (diploid) 314.338
CNS0095604Slightly white alabastrum(tetraploid) 14.038
CNS0095605Slightly white alabastrum(tetraploid) 23.284
CNS0095606Slightly white alabastrum(tetraploid) 32.654
CNS0095607Whole white alabastrum(tetraploid) 12.081
CNS0095608Whole white alabastrum(tetraploid) 23.296
CNS0095609Whole white alabastrum(tetraploid) 34.454
CNS0095610Silvery flower (tetraploid) 13.047
CNS0095611Silvery flower (tetraploid) 22.280
CNS0095612Silvery flower (tetraploid) 32.788
CNS0095613Golden flower (tetraploid) 10.934
CNS0095614Golden flower (tetraploid) 22.010
CNS0095615Golden flower (tetraploid) 30.737
CRA001975CRR073297Stem 15.082
CRR073298Stem 24.595
CRR073299Stem 33.577
CRR073300Leaf 14.989
CRR073301Leaf 24.725
CRR073302Leaf 32.426
CRR073303Juvenile bud 12.500
CRR073304Juvenile bud 22.642
CRR073305Juvenile bud 33.488
CRR073306Third green 12.144
CRR073307Third green 23.255
CRR073308Third green 32.972
CRR073309Second white 13.234
CRR073310Second white 23.523
CRR073311Second white 32.346
CRR073312Silver flowering 14.766
CRR073313Silver flowering 25.354
CRR073314Silver flowering 33.859
CRR073315Gold flowering 18.919
CRR073316Gold flowering 29.851
CRR073317Gold flowering 36.410
CRR073318Tawny withering 16.197
CRR073319Tawny withering 25.958
CRR073320Tawny withering 35.032