Gene detail

Detail information of GWHGAAZE020307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006356320.1	2.6285E-33	PREDICTED: F-box protein At3g08750-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	3E-13	F-box protein CPR30
trEMBL	tr\|M1CBE4\|M1CBE4_SOLTU	1E-33	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400063867}
TAIR10	AT1G77650.1	2E-12	F-box associated ubiquitination effector family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	83614821	83616410	+
GWHAAZE00000005	mRNA	83614821	83616410	+
GWHAAZE00000005	exon	83614821	83616410	+
GWHAAZE00000005	CDS	83614821	83616410	+

Transcript Sequence
>GWHTAAZE020329 ATGGCACGCAGCGGCGTTGGTGGCGTTAATAATAGTAATATGTCGGAAGATTTGTTGATTAATGTTCTGTCGAGGCTGCAGGTGAAATCGCTTTTGTGCTTCAAGTGTGTGAGCAAATACTGGAACACTCTCATCGAAAGCCCTGATTTTATCAAGAATCATTACCGCAATCTTAATAATTGTGACATGCTCCTTGCTCTTCATTACCTTAACCTACGGTTTATTCTTGCCGATCCCGACCCTGATTGTCTTTCCAATCGGTACATTTGTAAAATCTATGGCTATGATATTGTGAGCGACAACGAACTTTACAATTTTGTCACTAATTCTAATCGCTTCACTCCGATTGCCAATATCAGTAGCAGCGACGATGAATTTAACCCCAACACTACTTCCAATAAAGCCGATAGTACTAGTTCCAATAATTCCGTTAGAACTTATCCAAAATCCTCGGATGAGCTGCATGCGATATACTCAGATGGGATATACCCAGAACAAGCTGAGGTTTGGTCTAAGGAATTTGCATTGGCCATGTTCCACAATGATGATATCCGTAAAGGCCAACCCCAGCCCCCTCCATATGAGGATATTATTGATATTACACGAATATTCAGTTGTGTTTATTATTGGCACAATATTATTGGACCAGTTGACGGATTATTTCTACTCCACAATGGTTGTGCGGGTATGCTATATTATAATAAATTGGCTTTATGGAACCCTGCTACAACTGAGTTGAAACTCCTCCCATTACCCAACTTCAATTTTCCGCGTCCAAGACCGTATTGTGTATATGTATTTGGATTTGGTGTAGACCCTTTAACAAACAGCTACAAGGTAGTTTGGATCCCCGAAAAACAATGGGTCCCTCCACATGAAATGCCTGGACCTCCAAATGTTGCAGTGTATAGCCTTGCTACCGATTCTTGGAGACCTTTTAATGTTGCTTCGCCTCATATCCACGAGATTGTCCATTCTAATCCGAAGTACTTAAATGGAGCATGTTATTGGCTGTCTAATCGCGTACTATCAACAAATGGTAAGCAAATTCGGAATATTAACATTGTTTCATTTGACATGGGTAGTGATGTGTTTCATGACATACAAGTTCCAGATATTGTTAACAATTTAGAGAACTTTTCTCAAGATATTACACTTGTGTTGCACAATGACGATTCTATTGCCCTATTAGTATGTGATTATTTTAGTCCACGTGATTGTCTAGTGGAATCAATTGAGGTTTGGGTTATGAAGCATAAGGAGGAAGGCGGGTGTTGGACCAAACTGTTCACTCTTGGACTTGAGCCACATCTACAGTTAGAAACTCCGGTTGGGTTTTGGAAGAACTATAATGAGATTTTCTTCATAACTAAAACTCAAAAGCTTGTTTTGTACAACAGTGATACTGACGAAATTACTCACCTCGGCGTCCAATGTGATCCTGACGCCTACGCTTACAAGCATTCAATTCCGATTTTCAATTACAAGGAGAGCCTAGTTTCAGTGGGAGGACGAAAGAAGCAGAGCAAGAGGGGGAAATTGCATGCTATGGTTCAAAGTTTTGTAGCGTTTCAACCCACTCCACCATAA

Network for GWHGAAZE020307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	54	2.60E-07
PF08268.13	FBA_3	331	433	2.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.152
	SRR3591706	second leaf	0.041
	SRR3591707	mature leaf	0.039
	SRR3591708	Shoot apex	0.090
	SRR3591709	Stem	0.155
	SRR3591710	White floral bud	0.270
	SRR3591711	White flower	0.142
	SRR3591712	Green floral bud	0.025
	SRR3591713	Yellow flower	0.138
SRP173429	SRR8316895	Juvenile bud stage	5.082
	SRR8316896	Juvenile bud stage	7.385
	SRR8316897	Juvenile bud stage	0.183
	SRR8316894	Third green stage	3.911
	SRR8316900	Third green stage	16.213
	SRR8316901	Third green stage	12.247
	SRR8316898	Complete white stage	5.795
	SRR8316899	Complete white stage	13.565
	SRR8316903	Complete white stage	7.991
	SRR8316902	Silver flowering stage	2.961
	SRR8316904	Silver flowering stage	3.959
	SRR8316905	Silver flowering stage	1.050
	SRR8316906	Gold flowering stage	3.390
	SRR8316907	Gold flowering stage	4.744
	SRR8316908	Gold flowering stage	0.836
SRP132670	SRR6706286	Control	7.736
	SRR6706287	Light intensity 50%	7.753
	SRR6706288	Light intensity 20%	7.061
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.044
	CNS0095593	Slightly white alabastrum(diploid) 2	12.198
	CNS0095594	Slightly white alabastrum(diploid) 3	12.804
	CNS0095595	Whole white alabastrum(diploid) 2	17.933
	CNS0095596	Whole white alabastrum(diploid) 3	17.410
	CNS0095597	Whole white alabastrum(diploid) 4	20.774
	CNS0095598	Silvery flower (diploied) 1	7.181
	CNS0095599	Silvery flower (diploied) 2	8.989
	CNS0095600	Silvery flower (diploied) 3	6.836
	CNS0095601	Golden flower (diploid) 1	7.466
	CNS0095602	Golden flower (diploid) 2	5.285
	CNS0095603	Golden flower (diploid) 3	6.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.051
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.064
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	0.238
	CNS0095612	Silvery flower (tetraploid) 3	0.138
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.127
	CNS0095615	Golden flower (tetraploid) 3	0.065
CRA001975	CRR073297	Stem 1	6.219
	CRR073298	Stem 2	4.832
	CRR073299	Stem 3	3.965
	CRR073300	Leaf 1	10.035
	CRR073301	Leaf 2	5.581
	CRR073302	Leaf 3	4.488
	CRR073303	Juvenile bud 1	10.249
	CRR073304	Juvenile bud 2	10.501
	CRR073305	Juvenile bud 3	4.987
	CRR073306	Third green 1	6.999
	CRR073307	Third green 2	5.606
	CRR073308	Third green 3	6.829
	CRR073309	Second white 1	2.183
	CRR073310	Second white 2	2.835
	CRR073311	Second white 3	3.397
	CRR073312	Silver flowering 1	5.984
	CRR073313	Silver flowering 2	5.209
	CRR073314	Silver flowering 3	2.621
	CRR073315	Gold flowering 1	5.175
	CRR073316	Gold flowering 2	3.228
	CRR073317	Gold flowering 3	5.193
	CRR073318	Tawny withering 1	8.017
	CRR073319	Tawny withering 2	11.590
	CRR073320	Tawny withering 3	9.433