Gene detail

Detail information of GWHGAAZE020308

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007222660.1	hypothetical protein PRUPE_ppa004964mg [Prunus persica]
Swissprot	tr\|Q93Z08\|E136_ARATH	Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBL	tr\|M5XD44\|M5XD44_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23859.1}
TAIR10	AT5G58090.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	83621435	83625787	-
GWHAAZE00000005	mRNA	83621435	83625787	-
GWHAAZE00000005	exon	83621435	83622530	-
GWHAAZE00000005	exon	83622810	83622861	-
GWHAAZE00000005	exon	83623080	83623144	-
GWHAAZE00000005	exon	83625447	83625787	-
GWHAAZE00000005	CDS	83625447	83625787	-
GWHAAZE00000005	CDS	83623080	83623144	-
GWHAAZE00000005	CDS	83622810	83622861	-
GWHAAZE00000005	CDS	83621435	83622530	-

Transcript Sequence
>GWHTAAZE020330 ATGGGGTTTATTGTATCAGTGGGATTGCATTTGGTAATGGTATTATTAGTTTCAGTGGCGAGTTCAGTGGGTGGGATTGGTGCCAACTGGGGGACACAAGCATCACACCCACTGCCGCCAGAGACAGTGGTGAGGTTGCTGAGGGAAAATGGGGTTCGAAAGGTGAAGCTATTTGATGCAGATTATGGGGCACTCAAGGCCCTTAGTAAATCTGGGATTGAGGTTATGGTTGGGATTCCCAATGACTTGTTAGCAACTATGGCTTCAAGTATGAAAGCTGCTGAGAAATGGGTTTCCAAGAATGTCTCTGCTCATGTCTCTTCCAATAGTGTCAACATTAGGAGTGCCGCACTCCACCTGGGTGATAAGACTTCTACTGATGATTGGATCAAAACCAAGAGTACAACGTACTGGAAGAGCAGTTCCAAGCTCTATGCCGGTATGCAGATCCTGAAGCTGTACATTGCGGTTGGCAATGAACCTTTCTTAGCAACATACAATGGAAGCTTTCTAAGAACAACTTTCCCGGCTCTTAGAAACATCCAATCCGCCCTAATAAAAGCCAACCTTGGCAACCGAGTGAAGGTCACTGTCCCCCTCAACGCCGATGTATATGAGTCCTCCTCTTCCCTTCCCTCCGGCGGCGATTTCCGAGCCGACATCCACGACTATGTGTTCCAAATCGTCAAGTTCTTGAATGATAACGGGGCCCCTTTCACCGTCAACATTTACCCCTTCATTAGCCTGTACATTGACTCAAATTTCCCGGTTGAGTACGCCTTCTTTGATGGCAATGCATCTCCTATAAACGATGGTGGCACAAACTACGACAACATGTTCGACGCAAATCATGATACACTTGTTTGGGCTTTGCAGAGAAATGGATTCGGTAACATGCCCATTATAGTCGGTGAGATCGGGTGGCCGACCGATGGGGACCGGAATGCTAACCTCGAGTACGCCCAACGGTTCAACCAAGGGTTCATGCAACATAGTGCAAAAGGGACCCCAATGAGGCCTGGTCCTATTGACGCTTATCTTTTTAGCTTGATTGATGAGGATGCTAAGAGCATTGACCCGGGTAACTTCGAGCGCCATTGGGGAGTTTTTACTTTCGATGGTCAACCCAAGTACTTGCTCAATCTTGGGACCACAAACACGGGGTCTTTGGTGCCAGCTAGAAATGTGCAGTACCTGGAGAAAAAGTGGTGCGTGATGAAGCCATCGGCAGGGTTAGATGATCCACAGGTGGCACTTAGTGTGAGCTACGCTTGCTCGCTAGCCGACTGTACCAGCCTTGGCTATCAAACGACTTGCGGGGGATTGGATGAACGAGGGAACATTTCGTTTGCGTTTAATAGTTACTACCAGCAGAATAATCAGCTCAACGAGGCCTGCAAGTTCCCCGACCTATCGATGATCACGAAAACTGATCCAACAGTTGGAAGTTGCAGGTTTAGGGTCATGATTGAACCGTATTACGGGGGTGCAGTACCGAAACTTGGGTGCAGTTGGACCGGATGGGGTTTCGTTCTTGTTTTGTTGACAATTATT

Network for GWHGAAZE020308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	26	108	2.00E-11
PF00332.19	Glyco_hydro_17	135	381	1.30E-50
PF07983.14	X8	402	471	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19893	GN5_6	Metabolic pathways	map01100
K19893	GN5_6	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.703
	SRR3591706	second leaf	1.041
	SRR3591707	mature leaf	0.668
	SRR3591708	Shoot apex	1.754
	SRR3591709	Stem	2.202
	SRR3591710	White floral bud	0.196
	SRR3591711	White flower	0.123
	SRR3591712	Green floral bud	1.321
	SRR3591713	Yellow flower	0.137
SRP173429	SRR8316895	Juvenile bud stage	2.540
	SRR8316896	Juvenile bud stage	1.866
	SRR8316897	Juvenile bud stage	3.047
	SRR8316894	Third green stage	1.506
	SRR8316900	Third green stage	2.885
	SRR8316901	Third green stage	2.437
	SRR8316898	Complete white stage	0.107
	SRR8316899	Complete white stage	2.679
	SRR8316903	Complete white stage	0.507
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.342
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.541
	SRR8316907	Gold flowering stage	0.261
	SRR8316908	Gold flowering stage	0.250
SRP132670	SRR6706286	Control	3.838
	SRR6706287	Light intensity 50%	2.979
	SRR6706288	Light intensity 20%	3.416
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.211
	CNS0095593	Slightly white alabastrum(diploid) 2	3.018
	CNS0095594	Slightly white alabastrum(diploid) 3	2.444
	CNS0095595	Whole white alabastrum(diploid) 2	2.536
	CNS0095596	Whole white alabastrum(diploid) 3	2.767
	CNS0095597	Whole white alabastrum(diploid) 4	1.692
	CNS0095598	Silvery flower (diploied) 1	2.617
	CNS0095599	Silvery flower (diploied) 2	1.357
	CNS0095600	Silvery flower (diploied) 3	1.201
	CNS0095601	Golden flower (diploid) 1	1.330
	CNS0095602	Golden flower (diploid) 2	0.761
	CNS0095603	Golden flower (diploid) 3	0.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.943
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.285
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.712
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.639
	CNS0095610	Silvery flower (tetraploid) 1	1.142
	CNS0095611	Silvery flower (tetraploid) 2	1.323
	CNS0095612	Silvery flower (tetraploid) 3	0.516
	CNS0095613	Golden flower (tetraploid) 1	0.595
	CNS0095614	Golden flower (tetraploid) 2	0.797
	CNS0095615	Golden flower (tetraploid) 3	0.909
CRA001975	CRR073297	Stem 1	7.378
	CRR073298	Stem 2	7.870
	CRR073299	Stem 3	9.306
	CRR073300	Leaf 1	5.416
	CRR073301	Leaf 2	5.626
	CRR073302	Leaf 3	5.748
	CRR073303	Juvenile bud 1	5.780
	CRR073304	Juvenile bud 2	0.700
	CRR073305	Juvenile bud 3	6.779
	CRR073306	Third green 1	0.349
	CRR073307	Third green 2	1.250
	CRR073308	Third green 3	0.528
	CRR073309	Second white 1	1.963
	CRR073310	Second white 2	0.388
	CRR073311	Second white 3	0.898
	CRR073312	Silver flowering 1	1.408
	CRR073313	Silver flowering 2	3.481
	CRR073314	Silver flowering 3	4.160
	CRR073315	Gold flowering 1	2.176
	CRR073316	Gold flowering 2	4.112
	CRR073317	Gold flowering 3	4.932
	CRR073318	Tawny withering 1	4.819
	CRR073319	Tawny withering 2	2.316
	CRR073320	Tawny withering 3	4.471