Detail information of GWHGAAZE020315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAHK60836.15.847E-1498-hydroxygeraniol oxidoreductase [Catharanthus roseus]
COGNP_967848.11E-67alcohol dehydrogenase / formaldehyde dehydrogenase
Swissprottr|A1L4Y2|ADHL3_ARATH9E-77Alcohol dehydrogenase-like 3
trEMBLtr|W8JWV8|W8JWV8_CATRO2E-1498-hydroxygeraniol oxidoreductase {ECO:0000313|EMBL:AHK60836.1}
TAIR10AT1G32780.12E-52GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene8373069083732316-
GWHAAZE00000005mRNA8373069083732316-
GWHAAZE00000005exon8373069083730800-
GWHAAZE00000005exon8373129783731461-
GWHAAZE00000005exon8373154583731781-
GWHAAZE00000005exon8373185883732316-
GWHAAZE00000005CDS8373185883732316-
GWHAAZE00000005CDS8373154583731781-
GWHAAZE00000005CDS8373129783731461-
GWHAAZE00000005CDS8373069083730800-
Transcript Sequence

Network for GWHGAAZE020315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0264


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N2913.10E-09
PF00107.27ADH_zinc_N1532695.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00121frmA, ADH5, adhC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf90.389
SRR3591706second leaf603.934
SRR3591707mature leaf124.402
SRR3591708Shoot apex290.021
SRR3591709Stem14.290
SRR3591710White floral bud7.309
SRR3591711White flower3.851
SRR3591712Green floral bud36.991
SRR3591713Yellow flower18.519
SRP173429 SRR8316895Juvenile bud stage 87.748
SRR8316896Juvenile bud stage 50.810
SRR8316897Juvenile bud stage 46.098
SRR8316894Third green stage 10.129
SRR8316900Third green stage 5.460
SRR8316901Third green stage 9.321
SRR8316898Complete white stage 3.579
SRR8316899Complete white stage 18.389
SRR8316903Complete white stage 7.932
SRR8316902Silver flowering stage0.771
SRR8316904Silver flowering stage1.614
SRR8316905Silver flowering stage0.681
SRR8316906Gold flowering stage 3.746
SRR8316907Gold flowering stage 4.850
SRR8316908Gold flowering stage 18.220
SRP132670SRR6706286Control26.435
SRR6706287Light intensity 50%18.466
SRR6706288Light intensity 20%19.949
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1200.670
CNS0095593Slightly white alabastrum(diploid) 2186.642
CNS0095594Slightly white alabastrum(diploid) 3255.005
CNS0095595Whole white alabastrum(diploid) 2448.824
CNS0095596Whole white alabastrum(diploid) 313.842
CNS0095597Whole white alabastrum(diploid) 4246.697
CNS0095598Silvery flower (diploied) 165.847
CNS0095599Silvery flower (diploied) 287.344
CNS0095600Silvery flower (diploied) 314.520
CNS0095601Golden flower (diploid) 134.295
CNS0095602Golden flower (diploid) 227.387
CNS0095603Golden flower (diploid) 325.191
CNS0095604Slightly white alabastrum(tetraploid) 171.346
CNS0095605Slightly white alabastrum(tetraploid) 2169.461
CNS0095606Slightly white alabastrum(tetraploid) 3362.138
CNS0095607Whole white alabastrum(tetraploid) 181.663
CNS0095608Whole white alabastrum(tetraploid) 210.423
CNS0095609Whole white alabastrum(tetraploid) 320.817
CNS0095610Silvery flower (tetraploid) 16.527
CNS0095611Silvery flower (tetraploid) 29.969
CNS0095612Silvery flower (tetraploid) 38.452
CNS0095613Golden flower (tetraploid) 111.720
CNS0095614Golden flower (tetraploid) 216.998
CNS0095615Golden flower (tetraploid) 34.924
CRA001975CRR073297Stem 1102.824
CRR073298Stem 2128.050
CRR073299Stem 3175.583
CRR073300Leaf 18.493
CRR073301Leaf 28.848
CRR073302Leaf 39.717
CRR073303Juvenile bud 18.075
CRR073304Juvenile bud 21.378
CRR073305Juvenile bud 36.380
CRR073306Third green 11.109
CRR073307Third green 22.226
CRR073308Third green 31.568
CRR073309Second white 11.085
CRR073310Second white 23.378
CRR073311Second white 31.632
CRR073312Silver flowering 13.991
CRR073313Silver flowering 24.083
CRR073314Silver flowering 34.187
CRR073315Gold flowering 1106.925
CRR073316Gold flowering 2115.011
CRR073317Gold flowering 3166.091
CRR073318Tawny withering 1700.521
CRR073319Tawny withering 2314.295
CRR073320Tawny withering 31277.480