Detail information of GWHGAAZE020316


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAHK60836.15.61929E-318-hydroxygeraniol oxidoreductase [Catharanthus roseus]
COGNP_900410.11E-12alcohol dehydrogenase
Swissprottr|Q9SK87|ADHL2_ARATH3E-17Alcohol dehydrogenase-like 2
trEMBLtr|W8JWV8|W8JWV8_CATRO2E-318-hydroxygeraniol oxidoreductase {ECO:0000313|EMBL:AHK60836.1}
TAIR10AT1G22440.11E-14Zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene8373257383733457-
GWHAAZE00000005mRNA8373257383733457-
GWHAAZE00000005exon8373257383732614-
GWHAAZE00000005exon8373284583732987-
GWHAAZE00000005exon8373343383733457-
GWHAAZE00000005CDS8373343383733457-
GWHAAZE00000005CDS8373284583732987-
GWHAAZE00000005CDS8373257383732614-
Transcript Sequence

Network for GWHGAAZE020316

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0264


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N32693.20E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00121frmA, ADH5, adhC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf109.983
SRR3591706second leaf666.828
SRR3591707mature leaf135.413
SRR3591708Shoot apex267.533
SRR3591709Stem12.927
SRR3591710White floral bud9.767
SRR3591711White flower5.194
SRR3591712Green floral bud37.680
SRR3591713Yellow flower23.258
SRP173429 SRR8316895Juvenile bud stage 93.727
SRR8316896Juvenile bud stage 43.341
SRR8316897Juvenile bud stage 41.138
SRR8316894Third green stage 8.247
SRR8316900Third green stage 1.631
SRR8316901Third green stage 4.567
SRR8316898Complete white stage 4.756
SRR8316899Complete white stage 26.009
SRR8316903Complete white stage 4.781
SRR8316902Silver flowering stage0.970
SRR8316904Silver flowering stage1.248
SRR8316905Silver flowering stage0.094
SRR8316906Gold flowering stage 5.340
SRR8316907Gold flowering stage 3.621
SRR8316908Gold flowering stage 18.219
SRP132670SRR6706286Control74.720
SRR6706287Light intensity 50%39.958
SRR6706288Light intensity 20%40.483
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1115.452
CNS0095593Slightly white alabastrum(diploid) 2105.966
CNS0095594Slightly white alabastrum(diploid) 3159.947
CNS0095595Whole white alabastrum(diploid) 2380.358
CNS0095596Whole white alabastrum(diploid) 34.448
CNS0095597Whole white alabastrum(diploid) 4190.113
CNS0095598Silvery flower (diploied) 151.181
CNS0095599Silvery flower (diploied) 269.626
CNS0095600Silvery flower (diploied) 310.466
CNS0095601Golden flower (diploid) 123.506
CNS0095602Golden flower (diploid) 226.235
CNS0095603Golden flower (diploid) 325.033
CNS0095604Slightly white alabastrum(tetraploid) 146.367
CNS0095605Slightly white alabastrum(tetraploid) 293.061
CNS0095606Slightly white alabastrum(tetraploid) 3379.848
CNS0095607Whole white alabastrum(tetraploid) 150.063
CNS0095608Whole white alabastrum(tetraploid) 23.179
CNS0095609Whole white alabastrum(tetraploid) 318.656
CNS0095610Silvery flower (tetraploid) 17.638
CNS0095611Silvery flower (tetraploid) 211.472
CNS0095612Silvery flower (tetraploid) 39.880
CNS0095613Golden flower (tetraploid) 18.498
CNS0095614Golden flower (tetraploid) 219.512
CNS0095615Golden flower (tetraploid) 34.776
CRA001975CRR073297Stem 1104.082
CRR073298Stem 2157.524
CRR073299Stem 3191.541
CRR073300Leaf 16.353
CRR073301Leaf 23.924
CRR073302Leaf 33.222
CRR073303Juvenile bud 14.136
CRR073304Juvenile bud 21.343
CRR073305Juvenile bud 34.912
CRR073306Third green 11.812
CRR073307Third green 20.152
CRR073308Third green 30.365
CRR073309Second white 11.812
CRR073310Second white 21.821
CRR073311Second white 31.422
CRR073312Silver flowering 13.590
CRR073313Silver flowering 22.302
CRR073314Silver flowering 32.044
CRR073315Gold flowering 179.016
CRR073316Gold flowering 285.413
CRR073317Gold flowering 3146.489
CRR073318Tawny withering 1472.827
CRR073319Tawny withering 2156.431
CRR073320Tawny withering 3767.535