Gene detail

Detail information of GWHGAAZE020322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237753.1	1.28788E-30	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	2E-12	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|M0ZS94\|M0ZS94_SOLTU	2E-33	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006971}
TAIR10	AT4G12560.2	2E-12	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	84254599	84256170	+
GWHAAZE00000005	mRNA	84254599	84256170	+
GWHAAZE00000005	exon	84254599	84256170	+
GWHAAZE00000005	CDS	84254599	84256170	+

Transcript Sequence
>GWHTAAZE020344 ATGGCACGCAGCGGCGCTAGTGGCGTTAATAATAGTAATATGCCGGAAGATTTGTTGATTAATATTTTGTCGAGGCTGCAGGTGAAATCGCTTTTGTGCTTCAAGTGTGTGAGCAAATACTGGTACACTCTCATCGAAAGCCCTGATTTTATCAAGAATCATTACCGCAATCTTAATAATCGTGACATGCTCCTTGTTCTTCATTACCTTAAACAACGGTTTATTCTTCTCGATCCCGACCCTGATTGTCTTACCGATTGGTACATTTGTAAAATGTATGGCTACGATATTGTGAGCGACGATGAACTTTACAATGTCACTAATTCTAATCGCTTCACTCCGATTGCCAATATCAGTGGCAGCGACGATGAATTTAGCCCGGACACTACTTCCAACAAAGCTGATAGTACTACTTCCAATAATTCCATTAGAACATACCCAAAATCCTTGAATGAGCTGCATGTGATAAATTCAGATGAGATAAACCCAGATGAGGTTGACTCTAAGGAATTTGCATTAGCCATGTTCCACAATGATGATATCCGTAGAGGCCAACCCCAGCCCCCTCCATACGAGGATATTATTGATATTACACAAATATTCGGTCATATTTATTATTGGCACAATATTATTGGACCAGTTGACGGATTGTTTCTACTCCACAATGGTTATGAGGGTATGCTATATTATAATAAATTGGCTCTATGGAACCCTGCTACAACTGAATTGAGACTCCTCCCTTTACCCGACTTTAATTTTCCGCGTCCAGGACCGCATTGTGTATATGTATTTGGATTTGGTGTAGACCCTTTGACAAACAGGTACAAGGTAGTCTGGATCCCTGAAAAACAATGGATCCCTCCAGATGAAATGCCTGAACCTCCAAACGTTGCAGTGTATAGGCTTGCTACCAATTCTTGGAGACCTTTTAATGTTGCTTTGCCTCATATCCACGAGATTTTCCATTCTAATCCGACGTACTTAAATGGAGCATGTTATTGGCTGTCTGATCGTGTACAATCAATAAACGGTAAACATATTCGGAATATTAACATTGTTTCATTTGACATGGGTAGTGATGTGTTTCACGACATACCAGTTCCAGATAATTTTGCCAATTTAGAGATCTTTTCCCAAGATATTAGACTTGTGTTGCACAATGACGATTCTATTGCCCTGTTAGTAACTGATTATATTAGAGATTACGTAGTGGAATCAATTGAGATTTGGGTTATGAAGCATGAGGAGGGAGGGTACTGGACCAGACTTTTCACTCTTGGACTTGGGCCACATCTACAATTAGAAAATCCGCTTGGGTTTTGGAAGAACTATAATGAGATTTTCTTCACAACTAAAACTAAAAAGCTTGTTTTGTACAACAGTGATACTGACGAAATTACTCACCTCGGCGTCCAATGTGATCCTGACCCCTACTTTTATAGGTATTCACTTCCGATTTTCAATTATAAGGAAAGCCTAGTTTCAGTGGGAGGACGAAAGAAGCGCAGCAAGAGGGGGAAATTGCATGCTATGGTTCGAAGTTTTGTAGCGTTTCAACCCACTCTACCGTAG

Network for GWHGAAZE020322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	54	1.30E-08
PF07734.14	FBA_1	327	464	2.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.060
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.024
	SRR3591712	Green floral bud	0.035
	SRR3591713	Yellow flower	0.025
SRP173429	SRR8316895	Juvenile bud stage	2.851
	SRR8316896	Juvenile bud stage	7.649
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	3.697
	SRR8316900	Third green stage	8.283
	SRR8316901	Third green stage	8.682
	SRR8316898	Complete white stage	0.455
	SRR8316899	Complete white stage	2.953
	SRR8316903	Complete white stage	0.627
	SRR8316902	Silver flowering stage	0.403
	SRR8316904	Silver flowering stage	0.776
	SRR8316905	Silver flowering stage	0.408
	SRR8316906	Gold flowering stage	2.898
	SRR8316907	Gold flowering stage	1.634
	SRR8316908	Gold flowering stage	0.642
SRP132670	SRR6706286	Control	3.432
	SRR6706287	Light intensity 50%	3.029
	SRR6706288	Light intensity 20%	3.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.404
	CNS0095593	Slightly white alabastrum(diploid) 2	5.142
	CNS0095594	Slightly white alabastrum(diploid) 3	8.871
	CNS0095595	Whole white alabastrum(diploid) 2	10.623
	CNS0095596	Whole white alabastrum(diploid) 3	9.237
	CNS0095597	Whole white alabastrum(diploid) 4	10.123
	CNS0095598	Silvery flower (diploied) 1	3.097
	CNS0095599	Silvery flower (diploied) 2	1.818
	CNS0095600	Silvery flower (diploied) 3	1.685
	CNS0095601	Golden flower (diploid) 1	3.638
	CNS0095602	Golden flower (diploid) 2	4.489
	CNS0095603	Golden flower (diploid) 3	3.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.035
	CNS0095611	Silvery flower (tetraploid) 2	0.074
	CNS0095612	Silvery flower (tetraploid) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	1.930
	CRR073298	Stem 2	2.281
	CRR073299	Stem 3	1.541
	CRR073300	Leaf 1	2.871
	CRR073301	Leaf 2	1.243
	CRR073302	Leaf 3	1.853
	CRR073303	Juvenile bud 1	3.720
	CRR073304	Juvenile bud 2	2.624
	CRR073305	Juvenile bud 3	0.551
	CRR073306	Third green 1	1.523
	CRR073307	Third green 2	1.046
	CRR073308	Third green 3	1.053
	CRR073309	Second white 1	0.878
	CRR073310	Second white 2	0.415
	CRR073311	Second white 3	0.849
	CRR073312	Silver flowering 1	2.400
	CRR073313	Silver flowering 2	2.602
	CRR073314	Silver flowering 3	2.071
	CRR073315	Gold flowering 1	1.098
	CRR073316	Gold flowering 2	0.381
	CRR073317	Gold flowering 3	0.703
	CRR073318	Tawny withering 1	2.266
	CRR073319	Tawny withering 2	2.474
	CRR073320	Tawny withering 3	0.909