Gene detail

Detail information of GWHGAAZE020380

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009757931.1	0	PREDICTED: 66 kDa stress protein-like [Nicotiana sylvestris]
COG	YP_001518591.1	1E-27	WD-40 repeat-containing protein
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	5E-10	Notchless protein homolog
trEMBL	tr\|D7SJ83\|D7SJ83_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15544.3}
TAIR10	AT3G18060.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	2770350	2779116	-
GWHAAZE00000006	mRNA	2770350	2779116	-
GWHAAZE00000006	exon	2778722	2779116	-
GWHAAZE00000006	exon	2775619	2775864	-
GWHAAZE00000006	exon	2774680	2774841	-
GWHAAZE00000006	exon	2773656	2773842	-
GWHAAZE00000006	exon	2772913	2773341	-
GWHAAZE00000006	exon	2771088	2771501	-
GWHAAZE00000006	exon	2770350	2770604	-
GWHAAZE00000006	CDS	2778722	2779116	-
GWHAAZE00000006	CDS	2775619	2775864	-
GWHAAZE00000006	CDS	2774680	2774841	-
GWHAAZE00000006	CDS	2773656	2773842	-
GWHAAZE00000006	CDS	2772913	2773341	-
GWHAAZE00000006	CDS	2771088	2771501	-
GWHAAZE00000006	CDS	2770350	2770604	-

Transcript Sequence
>GWHTAAZE020402 ATGTCAACAAATCTCGTAGAAACCTACGCTTGTGTCCCGTCAACGGAGCGAGGACGAGGGATTTTGATCTCCGGGGACGCAAAATCGAACAGAATTCTGTACTGCAATGGGAGATCGGTGTTCCTCCGGTATCTGGATAGGCCACTCGAAGTGTCGGTGTACAACGAACACGCTTATCAGGTTACTGTGGCTAGGTTCTCGCCGAACGGGGAGTGGATCGCGTCGGCGGATGTGTCCGGGATCATGAGGATATGGGGGACGCATAATGATTTTGTTTTGAAGAATGAGTTTAGGGTTTTGTCCGGGAGGATTGATGATCTTCAGTGGTCTCCTGATGGGATGAGGATTGTTGCTTCGGGCGATGGCAAGGGGAAGTCTTTCGTTAGGGCTTTCATGAGGTTTTATGAGCTTATGCAGGTTATAATTTTCTTCCGAGTATTTTTTGGCCTTGTTATTACTGTCTTTGCCTCTCCAGAAGAGTCATACCTTCTGGGAGATAGATCTGCACTCTATGCTTTGAACTCTTGTTTTGAAGTGCTTGAATTCTGGGCAAGAAGAATAGCGCATATTAGAGAACAAGGCAACAACACCATGCATTATAGTAGATGGTGGATTAGACTGTGGTTAGGATGCCATGGGAGGTGGGATTCAGGAAGTAACGTAGGAGACTTTGATGGCCACTCAAGGAGAGTTCTAAGCTGTGCCTTTAAGCCAACGAGACCATTCCGCATTGTCACTTGTGGAGAGGACTTCTTGGTGAATTTTTACGAAGGACCACCATTTAAGTTCAAGCTTTCTCTTAGGACTCACTCAAATTTTGTGAATTGTGTGAGGTTCTCTCCGGATGGCAGCAAATTCATAAGTGTAAGCTCTGACAAAAAGGGTTTATTATATGATGCAAAAACTGCAGAGAAAATTGGAGAGCTCTCTTCGGAGAATGCTCACACCGGTAGCATATATGCTGTTAGTTGGAGTCCTGACAGTAAAGAGGTGCTAACAGTGTCTGCTGACAAGTCTGCAAAAGTGTGGGCAATATCCGAGGATGGTAATGGAGTGGTGAAGAAAACCCTAACATGCCCCATCACTGGTGGTGTTGAAGACATGCTTGTTGGGTGTCTTTGGCAGAATGATTATCTCGTTACAGTTTCTCTTGGTGGAACTATTTCTTTATTCTCAGCGAATAATCTTGACAAAGACCCTGTTACTTTGTGTGGTCACTTGAAGAATGTCAATTCATTAGCGGTTGTCAACACCAACCAGAAAGTTATACTGTCCTGTAGCTATGATGGTCTCATCTTTCAATGGATTCAAGGCATTGGATTTAGTGGTAGATTGGAAAGAAAGAATGTGAATAATGCTCAAATCAAATGTTTCGCTGCTGTTGAAGGAGAGATTGTTTCATCTGGATATGACAATAAGATTTGGCGGGTCCCATTACTTGGAGGAGGAGATCAATGTGGGGATGCAGATTCCGTTGACATTGGTAGTCAACCAAAGGACATAAGCCTTGCCCTTGACTCTCCTGAACTGGCCTTGGTTGCAATTGAAACAGGAGTAGTCCTCCTTCGTGGTACAAAGGTGGTGTCTACTACTAACCTAGGGTTCACTGTGACCGCATGTACAATAACACCTGACGGCAGTGAAGCCGTTGTGGGTGGGCAGGATGGTAAATTGCACTTGTATTCCGTCAACGGTGATACTCTTGAAGAACAGACAGTTCTTGAAAAACATCGAGGTCCCATCACTGTCATACGTTACTCTCCTGATGTTTCCATGTTTGCTTCAGGAGACTCCAATCGAGAAGCTGTTGTTTGGGATCGTGCAACTCGAGAGGTGAAGCTGAAGAATATGTTATTTCACACTGCCCGCATAAACTGCTTGGCTTGGTCTCCGGATAGCAGCATGGTTGCTACCGGATCACTAGACACGTCTGTGATTATATACGAAATATCAAAGCCGGCATCAAGCCGCATAACTATCAAGGGAGCTAACTTAGGGGGTGTATATGGAGTAGCTTTTACTGACGATCAGTGCGTGGTTAGTTCTGGTGAGGATGCTTGCGTTCGCGTCTGGAGGATAACAAAATAA

Network for GWHGAAZE020380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	52	85	0.029
PF00400.33	WD40	265	294	0.0032
PF00400.33	WD40	314	343	0.0034
PF00400.33	WD40	402	435	0.083
PF00400.33	WD40	620	648	0.00013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.169
	SRR3591706	second leaf	13.018
	SRR3591707	mature leaf	12.477
	SRR3591708	Shoot apex	16.572
	SRR3591709	Stem	17.856
	SRR3591710	White floral bud	26.191
	SRR3591711	White flower	18.907
	SRR3591712	Green floral bud	37.237
	SRR3591713	Yellow flower	15.431
SRP173429	SRR8316895	Juvenile bud stage	13.855
	SRR8316896	Juvenile bud stage	21.208
	SRR8316897	Juvenile bud stage	10.825
	SRR8316894	Third green stage	9.972
	SRR8316900	Third green stage	34.582
	SRR8316901	Third green stage	32.149
	SRR8316898	Complete white stage	9.960
	SRR8316899	Complete white stage	25.914
	SRR8316903	Complete white stage	15.202
	SRR8316902	Silver flowering stage	7.862
	SRR8316904	Silver flowering stage	11.613
	SRR8316905	Silver flowering stage	5.504
	SRR8316906	Gold flowering stage	16.098
	SRR8316907	Gold flowering stage	17.031
	SRR8316908	Gold flowering stage	15.763
SRP132670	SRR6706286	Control	29.125
	SRR6706287	Light intensity 50%	28.746
	SRR6706288	Light intensity 20%	28.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.733
	CNS0095593	Slightly white alabastrum(diploid) 2	14.558
	CNS0095594	Slightly white alabastrum(diploid) 3	13.515
	CNS0095595	Whole white alabastrum(diploid) 2	15.107
	CNS0095596	Whole white alabastrum(diploid) 3	20.671
	CNS0095597	Whole white alabastrum(diploid) 4	16.960
	CNS0095598	Silvery flower (diploied) 1	11.849
	CNS0095599	Silvery flower (diploied) 2	8.257
	CNS0095600	Silvery flower (diploied) 3	21.183
	CNS0095601	Golden flower (diploid) 1	7.070
	CNS0095602	Golden flower (diploid) 2	20.926
	CNS0095603	Golden flower (diploid) 3	19.936
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.872
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.401
	CNS0095610	Silvery flower (tetraploid) 1	21.925
	CNS0095611	Silvery flower (tetraploid) 2	21.839
	CNS0095612	Silvery flower (tetraploid) 3	19.910
	CNS0095613	Golden flower (tetraploid) 1	9.776
	CNS0095614	Golden flower (tetraploid) 2	18.945
	CNS0095615	Golden flower (tetraploid) 3	19.390
CRA001975	CRR073297	Stem 1	29.103
	CRR073298	Stem 2	29.168
	CRR073299	Stem 3	29.113
	CRR073300	Leaf 1	31.518
	CRR073301	Leaf 2	33.408
	CRR073302	Leaf 3	31.009
	CRR073303	Juvenile bud 1	33.619
	CRR073304	Juvenile bud 2	29.047
	CRR073305	Juvenile bud 3	33.256
	CRR073306	Third green 1	21.894
	CRR073307	Third green 2	21.723
	CRR073308	Third green 3	25.237
	CRR073309	Second white 1	12.873
	CRR073310	Second white 2	13.102
	CRR073311	Second white 3	15.327
	CRR073312	Silver flowering 1	19.468
	CRR073313	Silver flowering 2	18.577
	CRR073314	Silver flowering 3	19.349
	CRR073315	Gold flowering 1	13.510
	CRR073316	Gold flowering 2	14.476
	CRR073317	Gold flowering 3	11.559
	CRR073318	Tawny withering 1	26.008
	CRR073319	Tawny withering 2	18.549
	CRR073320	Tawny withering 3	25.955