Detail information of GWHGAAZE020438


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10052.10unnamed protein product [Coffea canephora]
COGYP_004981777.12E-19Serine/threonine protein kinase with PASTA sensors
Swissprottr|Q9LX30|GCN2_ARATH0Probable serine/threonine-protein kinase GCN2
trEMBLtr|A0A068UP12|A0A068UP12_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313|EMBL:CDP10052.1}
TAIR10AT3G59410.10protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene53479665363444-
GWHAAZE00000006mRNA53479665363444-
GWHAAZE00000006exon53634065363444-
GWHAAZE00000006exon53630705363122-
GWHAAZE00000006exon53629255362984-
GWHAAZE00000006exon53593955359592-
GWHAAZE00000006exon53591435359182-
GWHAAZE00000006exon53543305354434-
GWHAAZE00000006exon53537765354183-
GWHAAZE00000006exon53527205352851-
GWHAAZE00000006exon53525515352637-
GWHAAZE00000006exon53523635352449-
GWHAAZE00000006exon53521225352259-
GWHAAZE00000006exon53515395351684-
GWHAAZE00000006exon53508375350891-
GWHAAZE00000006exon53502495350418-
GWHAAZE00000006exon53494975349681-
GWHAAZE00000006exon53492115349356-
GWHAAZE00000006exon53479665348223-
GWHAAZE00000006CDS53634065363444-
GWHAAZE00000006CDS53630705363122-
GWHAAZE00000006CDS53629255362984-
GWHAAZE00000006CDS53593955359592-
GWHAAZE00000006CDS53591435359182-
GWHAAZE00000006CDS53543305354434-
GWHAAZE00000006CDS53537765354183-
GWHAAZE00000006CDS53527205352851-
GWHAAZE00000006CDS53525515352637-
GWHAAZE00000006CDS53523635352449-
GWHAAZE00000006CDS53521225352259-
GWHAAZE00000006CDS53515395351684-
GWHAAZE00000006CDS53508375350891-
GWHAAZE00000006CDS53502495350418-
GWHAAZE00000006CDS53494975349681-
GWHAAZE00000006CDS53492115349356-
GWHAAZE00000006CDS53479665348223-
Transcript Sequence

Network for GWHGAAZE020438

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05773.23RWD13871.50E-05
PF00069.26Pkinase4597562.50E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyPEK_GCN2

KEGG pathway

KO Enzyme pathway mapID
K16196EIF2AK4 Protein processing in endoplasmic reticulum map04141
Autophagy - animalmap04140
Autophagy - yeastmap04138

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.865
SRR3591706second leaf2.155
SRR3591707mature leaf3.256
SRR3591708Shoot apex2.844
SRR3591709Stem4.588
SRR3591710White floral bud7.338
SRR3591711White flower6.558
SRR3591712Green floral bud4.656
SRR3591713Yellow flower4.352
SRP173429 SRR8316895Juvenile bud stage 2.740
SRR8316896Juvenile bud stage 4.321
SRR8316897Juvenile bud stage 1.313
SRR8316894Third green stage 1.876
SRR8316900Third green stage 3.801
SRR8316901Third green stage 3.288
SRR8316898Complete white stage 1.939
SRR8316899Complete white stage 4.449
SRR8316903Complete white stage 5.130
SRR8316902Silver flowering stage1.645
SRR8316904Silver flowering stage3.976
SRR8316905Silver flowering stage1.740
SRR8316906Gold flowering stage 3.750
SRR8316907Gold flowering stage 2.399
SRR8316908Gold flowering stage 3.540
SRP132670SRR6706286Control3.122
SRR6706287Light intensity 50%4.459
SRR6706288Light intensity 20%4.490
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.048
CNS0095593Slightly white alabastrum(diploid) 21.057
CNS0095594Slightly white alabastrum(diploid) 31.351
CNS0095595Whole white alabastrum(diploid) 21.024
CNS0095596Whole white alabastrum(diploid) 30.847
CNS0095597Whole white alabastrum(diploid) 41.420
CNS0095598Silvery flower (diploied) 13.841
CNS0095599Silvery flower (diploied) 22.690
CNS0095600Silvery flower (diploied) 34.365
CNS0095601Golden flower (diploid) 10.959
CNS0095602Golden flower (diploid) 23.933
CNS0095603Golden flower (diploid) 33.818
CNS0095604Slightly white alabastrum(tetraploid) 11.984
CNS0095605Slightly white alabastrum(tetraploid) 21.920
CNS0095606Slightly white alabastrum(tetraploid) 37.297
CNS0095607Whole white alabastrum(tetraploid) 11.297
CNS0095608Whole white alabastrum(tetraploid) 21.286
CNS0095609Whole white alabastrum(tetraploid) 36.045
CNS0095610Silvery flower (tetraploid) 15.650
CNS0095611Silvery flower (tetraploid) 27.260
CNS0095612Silvery flower (tetraploid) 35.767
CNS0095613Golden flower (tetraploid) 11.091
CNS0095614Golden flower (tetraploid) 24.008
CNS0095615Golden flower (tetraploid) 32.981
CRA001975CRR073297Stem 13.318
CRR073298Stem 23.121
CRR073299Stem 32.254
CRR073300Leaf 14.666
CRR073301Leaf 23.187
CRR073302Leaf 32.375
CRR073303Juvenile bud 12.768
CRR073304Juvenile bud 21.092
CRR073305Juvenile bud 34.100
CRR073306Third green 10.817
CRR073307Third green 20.920
CRR073308Third green 31.128
CRR073309Second white 10.168
CRR073310Second white 21.228
CRR073311Second white 30.489
CRR073312Silver flowering 10.275
CRR073313Silver flowering 20.193
CRR073314Silver flowering 30.425
CRR073315Gold flowering 10.549
CRR073316Gold flowering 21.569
CRR073317Gold flowering 31.107
CRR073318Tawny withering 11.383
CRR073319Tawny withering 20.676
CRR073320Tawny withering 31.810