Gene detail

Detail information of GWHGAAZE020470

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007026515.1	0	Radical SAM superfamily protein [Theobroma cacao]
COG	YP_003387224.1	2E-145	biotin synthase
Swissprot	tr\|P54967\|BIOB_ARATH	0	Biotin synthase
trEMBL	tr\|A0A061ERL3\|A0A061ERL3_THECC	0	Radical SAM superfamily protein {ECO:0000313\|EMBL:EOY07017.1}
TAIR10	AT2G43360.1	1E-154	Radical SAM superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	5991114	5997280	-
GWHAAZE00000006	mRNA	5991114	5997280	-
GWHAAZE00000006	exon	5991114	5991514	-
GWHAAZE00000006	exon	5992208	5992347	-
GWHAAZE00000006	exon	5993002	5993207	-
GWHAAZE00000006	exon	5995312	5995418	-
GWHAAZE00000006	exon	5996509	5996688	-
GWHAAZE00000006	exon	5997278	5997280	-
GWHAAZE00000006	CDS	5997278	5997280	-
GWHAAZE00000006	CDS	5996509	5996688	-
GWHAAZE00000006	CDS	5995312	5995418	-
GWHAAZE00000006	CDS	5993002	5993207	-
GWHAAZE00000006	CDS	5992208	5992347	-
GWHAAZE00000006	CDS	5991203	5991514	-
GWHAAZE00000006	three_prime_UTR	5991114	5991202	-

Transcript Sequence
>GWHTAAZE020492 ATGGCTCAAGTTCATAGATATGCTCATAACTTTCGGGAAGTGCAGCAGTGTACTCTTCTATCTATTAAAACAGGCGGATGCAGTGAGGATTGTTCATATTGTCCTCAGTCCTCTAGGTATGACACTGGGCTGAAAGCGCAAAAGCTTATGAACAAGGATGCTGTTCTGCAGGCAGCACAAAAGGCAAAAGAGGCAGGTAGTACTCGTTTTTGCATGGGTGCTGCATGGAGAGACACAATTGGGAGGAAAACCAACTTCAGCAACATACTTGAATATGTGAAAGAAATAAGGGGAATGGGGATGGAGGTATGCTGCACCTTGGGAATGCTAGAGAAGCAACAAGCTTTAGAGCTAAAAAAGGCTGGCCTTACTGCTTATAACCATAATCTTGATACCTCAAGAGAGTTTTACCCTAATATTATTACCACAAGATCATATGACGAACGCCTCGAGACCCTTCAGCATGTGCGTGAAGCTGGCATCAATGTCTGTTCAGGAGGAATAATAGGGCTTGGAGAGGCAGAGGAGGACCGAGTTGGTTTGTTGCACACATTGGCAACTCTCCCTACACACCCAGAGAGCGTCCCCATCAATGCACTGCTTGCAGTCAAAGGCACACCTTTGGAAGATCAAAAGCCAGTCGAAATATGGGAGATGATTAGAATGATAGCCACGGCGCGTATCACTATGCCAAAAGCAATGGTGAGACTGTCTGCTGGGAGAGTTCGGTTCTCCATCCCCGAGCAAACGCTGTGTTTTCTAGCAGGAGCTAATTCGATATTCACGGGGGAGAAGCTTCTCACAACTCCAAACAACGACTTTGATGCTGATCAACTCATGTTCAAGCTTCTCGGACTTGTACCTAAAGGTCCTAGTTTTGATGATGCTCATGATACTGCTGCTGCTGAAGCAGAAAGTTGCCAGAAAGCTGCTTCCAGTTCTGGTTGAAGTTGGTCAAATCGCGTCTTTTTCTAAATTTTTTGGTGTTAATTTTCTAATGGGATACTGATTATTCATGTGATCAGTTCCATTCTCTC

Network for GWHGAAZE020470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04055.22	Radical_SAM	24	182	2.20E-14
PF06968.14	BATS	196	286	6.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01012	bioB	Metabolic pathways	map01100
K01012	bioB	Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0009102	biological_process	biotin biosynthetic process
GO:0004076	molecular_function	biotin synthase activity
GO:0003824	molecular_function	catalytic activity
GO:0051536	molecular_function	iron-sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.562
	SRR3591706	second leaf	34.529
	SRR3591707	mature leaf	13.610
	SRR3591708	Shoot apex	40.389
	SRR3591709	Stem	26.058
	SRR3591710	White floral bud	20.368
	SRR3591711	White flower	21.517
	SRR3591712	Green floral bud	30.768
	SRR3591713	Yellow flower	28.581
SRP173429	SRR8316895	Juvenile bud stage	21.230
	SRR8316896	Juvenile bud stage	32.936
	SRR8316897	Juvenile bud stage	13.803
	SRR8316894	Third green stage	10.625
	SRR8316900	Third green stage	38.950
	SRR8316901	Third green stage	32.367
	SRR8316898	Complete white stage	9.211
	SRR8316899	Complete white stage	25.828
	SRR8316903	Complete white stage	12.788
	SRR8316902	Silver flowering stage	8.353
	SRR8316904	Silver flowering stage	11.022
	SRR8316905	Silver flowering stage	5.478
	SRR8316906	Gold flowering stage	16.949
	SRR8316907	Gold flowering stage	17.732
	SRR8316908	Gold flowering stage	18.518
SRP132670	SRR6706286	Control	26.098
	SRR6706287	Light intensity 50%	31.343
	SRR6706288	Light intensity 20%	33.894
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.030
	CNS0095593	Slightly white alabastrum(diploid) 2	27.212
	CNS0095594	Slightly white alabastrum(diploid) 3	28.233
	CNS0095595	Whole white alabastrum(diploid) 2	20.939
	CNS0095596	Whole white alabastrum(diploid) 3	21.487
	CNS0095597	Whole white alabastrum(diploid) 4	15.291
	CNS0095598	Silvery flower (diploied) 1	13.272
	CNS0095599	Silvery flower (diploied) 2	13.361
	CNS0095600	Silvery flower (diploied) 3	19.429
	CNS0095601	Golden flower (diploid) 1	12.699
	CNS0095602	Golden flower (diploid) 2	15.998
	CNS0095603	Golden flower (diploid) 3	14.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.610
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.839
	CNS0095610	Silvery flower (tetraploid) 1	18.390
	CNS0095611	Silvery flower (tetraploid) 2	17.399
	CNS0095612	Silvery flower (tetraploid) 3	8.459
	CNS0095613	Golden flower (tetraploid) 1	8.430
	CNS0095614	Golden flower (tetraploid) 2	15.378
	CNS0095615	Golden flower (tetraploid) 3	3.229
CRA001975	CRR073297	Stem 1	37.300
	CRR073298	Stem 2	35.918
	CRR073299	Stem 3	36.648
	CRR073300	Leaf 1	36.326
	CRR073301	Leaf 2	32.868
	CRR073302	Leaf 3	42.866
	CRR073303	Juvenile bud 1	34.006
	CRR073304	Juvenile bud 2	32.210
	CRR073305	Juvenile bud 3	34.076
	CRR073306	Third green 1	12.137
	CRR073307	Third green 2	9.824
	CRR073308	Third green 3	11.239
	CRR073309	Second white 1	10.979
	CRR073310	Second white 2	6.433
	CRR073311	Second white 3	8.259
	CRR073312	Silver flowering 1	11.352
	CRR073313	Silver flowering 2	11.878
	CRR073314	Silver flowering 3	13.465
	CRR073315	Gold flowering 1	13.573
	CRR073316	Gold flowering 2	15.666
	CRR073317	Gold flowering 3	12.496
	CRR073318	Tawny withering 1	36.822
	CRR073319	Tawny withering 2	26.907
	CRR073320	Tawny withering 3	31.357