Detail information of GWHGAAZE020475


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10044.11.2808E-117unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UP61|A0A068UP61_COFCA5E-118Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313|EMBL:CDP10044.1}
TAIR10AT1G54380.11E-59spliceosome protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene60668616071157-
GWHAAZE00000006mRNA60668616071157-
GWHAAZE00000006exon60668616067409-
GWHAAZE00000006exon60685386068715-
GWHAAZE00000006exon60708776071157-
GWHAAZE00000006CDS60708776071157-
GWHAAZE00000006CDS60685386068715-
GWHAAZE00000006CDS60668616067409-
Transcript Sequence

Network for GWHGAAZE020475

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04938.13SIP1763322.50E-45
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13130GEMIN2, SIP1 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.630
SRR3591706second leaf1.995
SRR3591707mature leaf1.380
SRR3591708Shoot apex2.549
SRR3591709Stem2.141
SRR3591710White floral bud1.783
SRR3591711White flower4.656
SRR3591712Green floral bud4.687
SRR3591713Yellow flower3.193
SRP173429 SRR8316895Juvenile bud stage 4.030
SRR8316896Juvenile bud stage 4.079
SRR8316897Juvenile bud stage 2.881
SRR8316894Third green stage 1.470
SRR8316900Third green stage 2.952
SRR8316901Third green stage 3.452
SRR8316898Complete white stage 0.668
SRR8316899Complete white stage 3.547
SRR8316903Complete white stage 1.371
SRR8316902Silver flowering stage2.181
SRR8316904Silver flowering stage1.502
SRR8316905Silver flowering stage0.280
SRR8316906Gold flowering stage 1.740
SRR8316907Gold flowering stage 2.418
SRR8316908Gold flowering stage 3.423
SRP132670SRR6706286Control2.160
SRR6706287Light intensity 50%1.791
SRR6706288Light intensity 20%1.741
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.214
CNS0095593Slightly white alabastrum(diploid) 23.364
CNS0095594Slightly white alabastrum(diploid) 33.927
CNS0095595Whole white alabastrum(diploid) 24.282
CNS0095596Whole white alabastrum(diploid) 32.389
CNS0095597Whole white alabastrum(diploid) 41.604
CNS0095598Silvery flower (diploied) 13.439
CNS0095599Silvery flower (diploied) 23.860
CNS0095600Silvery flower (diploied) 33.062
CNS0095601Golden flower (diploid) 11.733
CNS0095602Golden flower (diploid) 22.902
CNS0095603Golden flower (diploid) 32.778
CNS0095604Slightly white alabastrum(tetraploid) 13.768
CNS0095605Slightly white alabastrum(tetraploid) 24.496
CNS0095606Slightly white alabastrum(tetraploid) 35.329
CNS0095607Whole white alabastrum(tetraploid) 12.551
CNS0095608Whole white alabastrum(tetraploid) 21.336
CNS0095609Whole white alabastrum(tetraploid) 32.998
CNS0095610Silvery flower (tetraploid) 15.170
CNS0095611Silvery flower (tetraploid) 22.915
CNS0095612Silvery flower (tetraploid) 31.804
CNS0095613Golden flower (tetraploid) 11.923
CNS0095614Golden flower (tetraploid) 22.442
CNS0095615Golden flower (tetraploid) 30.857
CRA001975CRR073297Stem 13.713
CRR073298Stem 22.188
CRR073299Stem 33.400
CRR073300Leaf 12.212
CRR073301Leaf 22.132
CRR073302Leaf 31.907
CRR073303Juvenile bud 12.222
CRR073304Juvenile bud 21.573
CRR073305Juvenile bud 32.952
CRR073306Third green 10.257
CRR073307Third green 20.638
CRR073308Third green 30.217
CRR073309Second white 11.662
CRR073310Second white 20.910
CRR073311Second white 31.083
CRR073312Silver flowering 10.820
CRR073313Silver flowering 20.851
CRR073314Silver flowering 30.247
CRR073315Gold flowering 12.734
CRR073316Gold flowering 23.707
CRR073317Gold flowering 32.079
CRR073318Tawny withering 13.676
CRR073319Tawny withering 23.776
CRR073320Tawny withering 34.322