Gene detail

Detail information of GWHGAAZE020488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009628466.1	0	PREDICTED: acetylornithine aminotransferase, mitochondrial [Nicotiana tomentosiformis]
COG	YP_001275205.1	1E-131	acetylornithine and succinylornithine aminotransferase
Swissprot	tr\|O04866\|ARGD_ALNGL	0	Acetylornithine aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|A0A067KLJ7\|A0A067KLJ7_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37012.1}
TAIR10	AT1G80600.1	0	HOPW1-1-interacting 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	6397177	6399503	+
GWHAAZE00000006	mRNA	6397177	6399503	+
GWHAAZE00000006	exon	6397177	6397599	+
GWHAAZE00000006	exon	6397743	6398177	+
GWHAAZE00000006	exon	6398964	6399503	+
GWHAAZE00000006	CDS	6397177	6397599	+
GWHAAZE00000006	CDS	6397743	6398177	+
GWHAAZE00000006	CDS	6398964	6399503	+

Transcript Sequence
>GWHTAAZE020510 ATGAGTTCACTCAATCTTCTCCTCGGCAATACGGTTTCACCACTGAGCTATCTTCATCGTCCAATTAACTTTCGAACCGGATCATTTTCAATTCAATCCAATGGTGGGAGAGTGCTTGCTTGTGCTAATGTGGAAGAAGTACGGGCACCGGATTCGGCAAAATTAGGCTTGGGGGTATCGAGTAAGAAGGTGATGGAGGATGATAGCAGGTTTTTGGTGGGGACTTATGCTAGAACTCCGCTTGTGCTCTCAAGTGGCAAGGCTTGTAAAGTATTCGATCCTGAAGGGCGAGAGTATTTGGATATGACATCCGGGATTGCAGTGAATGCACTTGGGCATGGGGATCCCGACTGGGTGATGGCGGTGACAGGGCAGGCGACAATACTGGCGCATGTCAGCAATATTTTCTACACACTTCCTCAGGTGGAGCTTGCAAAACGCCTTGTTGGTTGTTCGTTTGCTGATCGTGTATTCTTCTCAAACTCTGGAACGGAAGCAAATGAAGCTGCAATTAAATTTGCCAGAAAGTTCCAACGATTTTCCCATCCCGATGGGCAGGAGGCACCTATGGAGTTTATTTCATTTAGTAATAGCTTCCATGGGAGAACCATGGGTGCTCTTGCCTTGACAAGCAAAGAGCACTACAGAACACCTTTTCAACCTGTGATGCCAGGTGTCACTTTTCTAGAGTATGGGGATATTGATGCTGCAAAGGAACTCATTCGAAGTGGTAATATTGCTGCAGTATTTGTGGAACCGATTCAGGGTGAAGGTGGCATATATAGTGCAACAAAGGAGTTTTTACAATCACTACGTACTGCCTGTGATGATTCTGGGTCTCTATTGGTTTATGATGAGGTTCAATGTGGATTAGGCCGCACAGGTTATCTTTGGGCCCATGAAGCTTATGATGTATACCCAGATATGATGACCCTCGCAAAGCCCCTCGCTGGTGGTCTTCCCATAGGAGCCGTACTAGTAACAGAAAGAGTTGCTTCTGCCATAAATTACGGAGATCACGGAAGCACTTTTGCTGGAGGACCTCTTATTTGCACTGCTGCAATTGCAGTTCTTGATAAAATCTCAAACCCGAGTTTTTTGGCCAGTGTATCCAAGAAAGGCAAGTACTTGAAGCAAATGCTGATACAGAAGTTGGGGGGAAACTCGCATGTGAGAGAAGTACGAGGTCTTGGGCTTATTGTGGGAATAGAGCTGGATGTATCGGCCTCATCACTTGTGAGTGCATGCCAAAAATCTGGCCTTCTGATATTAACTGCAGGGAAAGGAAATGTTGTTAGGCTGGTGCCACCGTTGGTCATCTCAGAGCAGGAATTGGAATGTGCGGTTGAGATCATGCTTGAATGTTTACCTGTTCTTGATGAGAGTAACTCAAATTAG

Network for GWHGAAZE020488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00202.22	Aminotran_3	79	456	9.10E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00818	E2.6.1.11, argD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006525	biological_process	arginine metabolic process
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.424
	SRR3591706	second leaf	27.769
	SRR3591707	mature leaf	39.042
	SRR3591708	Shoot apex	45.194
	SRR3591709	Stem	49.824
	SRR3591710	White floral bud	24.145
	SRR3591711	White flower	29.558
	SRR3591712	Green floral bud	56.815
	SRR3591713	Yellow flower	30.641
SRP173429	SRR8316895	Juvenile bud stage	38.067
	SRR8316896	Juvenile bud stage	55.418
	SRR8316897	Juvenile bud stage	22.511
	SRR8316894	Third green stage	22.808
	SRR8316900	Third green stage	89.009
	SRR8316901	Third green stage	76.384
	SRR8316898	Complete white stage	14.476
	SRR8316899	Complete white stage	69.218
	SRR8316903	Complete white stage	22.832
	SRR8316902	Silver flowering stage	19.934
	SRR8316904	Silver flowering stage	23.942
	SRR8316905	Silver flowering stage	12.043
	SRR8316906	Gold flowering stage	56.488
	SRR8316907	Gold flowering stage	51.357
	SRR8316908	Gold flowering stage	56.333
SRP132670	SRR6706286	Control	53.005
	SRR6706287	Light intensity 50%	53.887
	SRR6706288	Light intensity 20%	60.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.992
	CNS0095593	Slightly white alabastrum(diploid) 2	56.340
	CNS0095594	Slightly white alabastrum(diploid) 3	54.830
	CNS0095595	Whole white alabastrum(diploid) 2	56.385
	CNS0095596	Whole white alabastrum(diploid) 3	61.304
	CNS0095597	Whole white alabastrum(diploid) 4	51.351
	CNS0095598	Silvery flower (diploied) 1	38.847
	CNS0095599	Silvery flower (diploied) 2	33.225
	CNS0095600	Silvery flower (diploied) 3	54.740
	CNS0095601	Golden flower (diploid) 1	41.196
	CNS0095602	Golden flower (diploid) 2	61.139
	CNS0095603	Golden flower (diploid) 3	54.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.406
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.591
	CNS0095610	Silvery flower (tetraploid) 1	51.746
	CNS0095611	Silvery flower (tetraploid) 2	60.270
	CNS0095612	Silvery flower (tetraploid) 3	45.031
	CNS0095613	Golden flower (tetraploid) 1	44.649
	CNS0095614	Golden flower (tetraploid) 2	55.338
	CNS0095615	Golden flower (tetraploid) 3	43.283
CRA001975	CRR073297	Stem 1	53.036
	CRR073298	Stem 2	57.950
	CRR073299	Stem 3	60.625
	CRR073300	Leaf 1	72.567
	CRR073301	Leaf 2	72.187
	CRR073302	Leaf 3	70.528
	CRR073303	Juvenile bud 1	74.191
	CRR073304	Juvenile bud 2	70.998
	CRR073305	Juvenile bud 3	69.712
	CRR073306	Third green 1	9.327
	CRR073307	Third green 2	8.499
	CRR073308	Third green 3	8.042
	CRR073309	Second white 1	32.659
	CRR073310	Second white 2	22.711
	CRR073311	Second white 3	25.081
	CRR073312	Silver flowering 1	22.921
	CRR073313	Silver flowering 2	28.860
	CRR073314	Silver flowering 3	20.320
	CRR073315	Gold flowering 1	40.890
	CRR073316	Gold flowering 2	53.959
	CRR073317	Gold flowering 3	52.559
	CRR073318	Tawny withering 1	34.946
	CRR073319	Tawny withering 2	31.456
	CRR073320	Tawny withering 3	39.843