Gene detail

Detail information of GWHGAAZE020533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009350523.1	0	PREDICTED: flowering time control protein FPA-like [Pyrus x bretschneideri]
COG	YP_503016.1	0.0000008	RNA recognition motif-containing protein
Swissprot	tr\|Q8LPQ9\|FPA_ARATH	2E-178	Flowering time control protein FPA
trEMBL	tr\|M5XXT9\|M5XXT9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26568.1}
TAIR10	AT2G43410.4	3E-155	RNA binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	8588844	8603268	+
GWHAAZE00000006	mRNA	8588844	8603268	+
GWHAAZE00000006	exon	8588844	8589119	+
GWHAAZE00000006	exon	8598171	8598416	+
GWHAAZE00000006	exon	8598714	8598791	+
GWHAAZE00000006	exon	8599330	8600309	+
GWHAAZE00000006	exon	8601779	8603099	+
GWHAAZE00000006	exon	8603194	8603268	+
GWHAAZE00000006	CDS	8588844	8589119	+
GWHAAZE00000006	CDS	8598171	8598416	+
GWHAAZE00000006	CDS	8598714	8598791	+
GWHAAZE00000006	CDS	8599330	8600309	+
GWHAAZE00000006	CDS	8601779	8603099	+
GWHAAZE00000006	CDS	8603194	8603268	+

Transcript Sequence
>GWHTAAZE020557 ATGTTTTCTCAGAGCAAATCGAACAATCATGGGGGATATGGAGACACCGAACCGACGTCGAATCTGTGGGTGGGGAACCTGGCAATGGACGTAACGGAATCCGATTTGACGATTTTGTTCGAGAGGCACGGGGCAATGGATTCCGTAACGCTGTATTCATCGCGGAGCTACGCGTTTGTGTGTTATAAGCAGATCAAGGACGCGAAATCGGCAAAGGATGCTCTGCAAGGGACGGTTCTTCGCGGACATGCGATTAAGATCGACTTTGCGAAACCGGCTAGGCCATCTAAGAGTCTTTGGGTGGGTGGGATTGGCCCATCTGTTCTCAAGGAAGAATTGGAAGCGCAATTTCTCAAATTTGGTAAAATTGAGGACTTAAAGTTTTTTAGGGATCGCAACACTGCATTTGTTGACTATTTTAGATTGGAAGATGCCTGTCAAGCATTGAAAATTATGAATGGGACACAGATAGGTGATGGCCAGATACGTGTCGATTTCCTCAGGTCACATCCTTCAAGAAGAGAACACGGCCGTGCTTGGGAAGGACAGTTTTCCAGTAAAAGCATGGGCCCTCTTGATTCACCATGGATGCCACAACAGCATTCTAAATCTTTGGGAGGGCTAGAAGGGGATGGACAGCCAAGTAATGTTTTGTGCATATCTTACCCTCATACTGTTCATATTGATGAACAAATGCTTCATAATGCCATGATCTTATTTGGTGAGATTGAGGGTATTAGAAGTGTTCCTTTAAGGCACTGCTCATATGTTGAATTTAGGAGTGTGGAAGAAGCACGACGTGCTAAAGAGGGATTGCAGGGGAAACTTTTCAATGATCCAAGGATATTAATTACCTACTCGAATAGTGAGCTTGCACCCAGCAAAGACTACCCTGGATTTTATCCAGGAATAAATGGGCCAAGGCCTGGTATGTTTCTTAACGAAATTCCGTTCCGACCTCCACAAATGGAGCGCTTCAATCATAATCAATCAATGATACCGAACAATTTTCCTGGTCATTTACCACTTCGCGGTATTGTTGGTCCCGATATGCTGACGAGGCCTTTGGGTCCTCAAGGTAACTTCGAACCTTTACTTCCACACGCAGAATTCAATAATTTGGACAAGCTTGGTAAATTACAGAACACGAACCCCAGCTCCCCGATGGGTGGTCCAAATTTGAAAAGATCAGCTCCACCACTCCCTTCTATGAGTCCATCGATCAGACCCATGTCTGGTAATTGGGACGTGTTTAATGCAAACCAACTTCAGAGGGAATCTAAAAGATCAAGAACTGAGGATCCTCCTTTTTCTTTCAATCAAATAGATGACCGTGGACTGGGTTTGAATCAAGTACGTGGGGTTGGTCCACAAGTAGATGGAGTTGATTTACGTCCACTTGTAAATGTTCAAGCGAAGAATAACCGAATTTGTCCAGTAGACACAAGTGTCACAAGTGGAGGAGTCACTCGGGGCTCTCCTGGGCTTGATTATGTGTGGCGAGGTGTTATTGGCAAGGGTGGGACACCTGTTTGTCATGCTCGTTGTGTTCCTATTGGGGAAGGTATTGGTTCTGAGATTCCTGATGTTGTAAATTGCTCAGCAAGAACTGGACTGGACATGTTAACAAAGCACTATGCAGATGCCGTTGGATTTGAGATTATTTTCTTCTTGCCTGATAGTGAAGAGGATTTTGCTCCATACACAGAGTTTCTTCATTATTTGGGTGCCAAAAACCGGGCTGGGGTTGCGAAATTTGATGATGGGACCACTTTATTCTTGGTGCCCCCGTCTGATTTCCTTACAAAGGTTTTAAATGTTTCTGGCCCTGAGCGCCTCTATGGTGTTGTTCTGAAGTTCCACCAACATGCCCCTAGTCGTACATCCGTCCACTCATCACCTCGGCCTCAATACATTGATAGATCACATATAACCCCTCAAGCTGAATACAATTTAAATCCCCGTGAGAGCGTTTTGCAAATCGATTCACATGAGGGTTTGAAGTCTCATGCAAAGGTTCATGGTCTGCCAAGCGGCGAATCCCTTCCTATGCATGCGGGCCTTCCAAGTAATACTGCATCGATTTCCCAAGCTGGTGTTACATTAACACCCGAACTCATTGCCACTTTGGCTTCTTTCCTACCGGCCAAAGAAAAATTGCACGTTTCAACACCTGCCGCTCCTGATAGACAACTCTCACAGGGATGGCAAAATGACCGAAATGCCCCTGAGCTGATGGGTCATCCGATGCAGCAAGTTGGTAGCCAGTTTAATCCCCAGCTTCACGCTTATCAAAATGACTATATTGCCCCTGAGCACCCCACGCAAACAGGTCATCAACTCCAACAATTAGGTAGCAAGTTTAATCCCCAACATCAAGCTTATCAAAATGACCATAATGCCCCTGTGCAAAATGGTCATCAACTCGAACAATTAGGTAGCCAGTTTAATCCCCGGACCCAGTTCGAGGCCTATCAAAACATCTCACCAACACTTACACAAGGGAATACCACCCCTGAGAAAATCCGAGATCACGCTTACAACACAGCAAAGCATGTTGCCTTCTCATCTAGACCGTCAAATAAATTTCCGAGCCCGTCTCAGAGTGGGCAATTTGGAGCTTACCCTCAGGTCAACCAGCAGTATCACCTTGAAACTAAGCAGGATAATAATAAGTCTAGCTACGGAGGAGATGCTTTTGGGTTATATAGTCCGTCAAATCCTGATACATCATCATCTAATAATCAAATTCATGGTGGTGCTAATGTTTCCCAGATGCGTAGTGTTAATAATACAGTGGATAATAATGCTGAGAAGTCCAATTTGGAGCTTCCAAATCAGGTTCAGCAGCAGCTTCAGTCTGCGTTGTATGGAGCAGGTCCAAGCACATCGCGACCTGAGGCACTCAAGCAGGTCAAGGGTCTGGCAATCACTGATGAGATTTCTTTCATCGAGGTAATTACTCACCCTCATTAA

Network for GWHGAAZE020533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	22	86	2.40E-12
PF00076.23	RRM_1	99	162	2.80E-10
PF00076.23	RRM_1	228	281	6.70E-06
PF07744.14	SPOC	496	611	7.10E-15

Protein Sequence

>GWHPAAZE020546
MFSQSKSNNHGGYGDTEPTSNLWVGNLAMDVTESDLTILFERHGAMDSVTLYSSRSYAFVCYKQIKDAKSAKDALQGTVLRGHAIKIDFAKPARPSKSLWVGGIGPSVLKEELEAQFLKFGKIEDLKFFRDRNTAFVDYFRLEDACQALKIMNGTQIGDGQIRVDFLRSHPSRREHGRAWEGQFSSKSMGPLDSPWMPQQHSKSLGGLEGDGQPSNVLCISYPHTVHIDEQMLHNAMILFGEIEGIRSVPLRHCSYVEFRSVEEARRAKEGLQGKLFNDPRILITYSNSELAPSKDYPGFYPGINGPRPGMFLNEIPFRPPQMERFNHNQSMIPNNFPGHLPLRGIVGPDMLTRPLGPQGNFEPLLPHAEFNNLDKLGKLQNTNPSSPMGGPNLKRSAPPLPSMSPSIRPMSGNWDVFNANQLQRESKRSRTEDPPFSFNQIDDRGLGLNQVRGVGPQVDGVDLRPLVNVQAKNNRICPVDTSVTSGGVTRGSPGLDYVWRGVIGKGGTPVCHARCVPIGEGIGSEIPDVVNCSARTGLDMLTKHYADAVGFEIIFFLPDSEEDFAPYTEFLHYLGAKNRAGVAKFDDGTTLFLVPPSDFLTKVLNVSGPERLYGVVLKFHQHAPSRTSVHSSPRPQYIDRSHITPQAEYNLNPRESVLQIDSHEGLKSHAKVHGLPSGESLPMHAGLPSNTASISQAGVTLTPELIATLASFLPAKEKLHVSTPAAPDRQLSQGWQNDRNAPELMGHPMQQVGSQFNPQLHAYQNDYIAPEHPTQTGHQLQQLGSKFNPQHQAYQNDHNAPVQNGHQLEQLGSQFNPRTQFEAYQNISPTLTQGNTTPEKIRDHAYNTAKHVAFSSRPSNKFPSPSQSGQFGAYPQVNQQYHLETKQDNNKSSYGGDAFGLYSPSNPDTSSSNNQIHGGANVSQMRSVNNTVDNNAEKSNLELPNQVQQQLQSALYGAGPSTSRPEALKQVKGLAITDEISFIEVITHPH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.836
	SRR3591706	second leaf	0.747
	SRR3591707	mature leaf	0.781
	SRR3591708	Shoot apex	0.865
	SRR3591709	Stem	0.599
	SRR3591710	White floral bud	1.116
	SRR3591711	White flower	1.009
	SRR3591712	Green floral bud	1.081
	SRR3591713	Yellow flower	0.739
SRP173429	SRR8316895	Juvenile bud stage	3.680
	SRR8316896	Juvenile bud stage	5.892
	SRR8316897	Juvenile bud stage	0.527
	SRR8316894	Third green stage	3.068
	SRR8316900	Third green stage	5.774
	SRR8316901	Third green stage	5.864
	SRR8316898	Complete white stage	1.492
	SRR8316899	Complete white stage	6.535
	SRR8316903	Complete white stage	4.745
	SRR8316902	Silver flowering stage	1.990
	SRR8316904	Silver flowering stage	2.624
	SRR8316905	Silver flowering stage	1.177
	SRR8316906	Gold flowering stage	3.297
	SRR8316907	Gold flowering stage	3.319
	SRR8316908	Gold flowering stage	1.767
SRP132670	SRR6706286	Control	8.780
	SRR6706287	Light intensity 50%	8.614
	SRR6706288	Light intensity 20%	8.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.134
	CNS0095593	Slightly white alabastrum(diploid) 2	2.374
	CNS0095594	Slightly white alabastrum(diploid) 3	2.179
	CNS0095595	Whole white alabastrum(diploid) 2	1.937
	CNS0095596	Whole white alabastrum(diploid) 3	1.279
	CNS0095597	Whole white alabastrum(diploid) 4	1.653
	CNS0095598	Silvery flower (diploied) 1	2.427
	CNS0095599	Silvery flower (diploied) 2	1.906
	CNS0095600	Silvery flower (diploied) 3	5.305
	CNS0095601	Golden flower (diploid) 1	2.169
	CNS0095602	Golden flower (diploid) 2	4.907
	CNS0095603	Golden flower (diploid) 3	4.938
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.970
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.357
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.591
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.924
	CNS0095610	Silvery flower (tetraploid) 1	1.352
	CNS0095611	Silvery flower (tetraploid) 2	0.804
	CNS0095612	Silvery flower (tetraploid) 3	1.049
	CNS0095613	Golden flower (tetraploid) 1	0.940
	CNS0095614	Golden flower (tetraploid) 2	1.541
	CNS0095615	Golden flower (tetraploid) 3	0.796
CRA001975	CRR073297	Stem 1	9.287
	CRR073298	Stem 2	8.235
	CRR073299	Stem 3	3.606
	CRR073300	Leaf 1	9.607
	CRR073301	Leaf 2	8.075
	CRR073302	Leaf 3	2.949
	CRR073303	Juvenile bud 1	3.413
	CRR073304	Juvenile bud 2	2.694
	CRR073305	Juvenile bud 3	4.958
	CRR073306	Third green 1	1.425
	CRR073307	Third green 2	1.135
	CRR073308	Third green 3	1.476
	CRR073309	Second white 1	2.956
	CRR073310	Second white 2	2.524
	CRR073311	Second white 3	2.153
	CRR073312	Silver flowering 1	1.841
	CRR073313	Silver flowering 2	2.665
	CRR073314	Silver flowering 3	2.998
	CRR073315	Gold flowering 1	0.784
	CRR073316	Gold flowering 2	1.173
	CRR073317	Gold flowering 3	0.477
	CRR073318	Tawny withering 1	3.144
	CRR073319	Tawny withering 2	1.994
	CRR073320	Tawny withering 3	2.297