Detail information of GWHGAAZE020535


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273836.20PREDICTED: conserved oligomeric Golgi complex subunit 3 [Vitis vinifera]
trEMBLtr|D7TC86|D7TC86_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI27744.3}
TAIR10AT1G73430.20sec34-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene86367578664710-
GWHAAZE00000006mRNA86367578664710-
GWHAAZE00000006exon86646248664710-
GWHAAZE00000006exon86639898664072-
GWHAAZE00000006exon86637678663874-
GWHAAZE00000006exon86630148663058-
GWHAAZE00000006exon86628548662928-
GWHAAZE00000006exon86626508662745-
GWHAAZE00000006exon86618108661887-
GWHAAZE00000006exon86613858661470-
GWHAAZE00000006exon86576888657754-
GWHAAZE00000006exon86574728657534-
GWHAAZE00000006exon86572828657383-
GWHAAZE00000006exon86570638657167-
GWHAAZE00000006exon86568488656940-
GWHAAZE00000006exon86563628656450-
GWHAAZE00000006exon86496038649822-
GWHAAZE00000006exon86465938646679-
GWHAAZE00000006exon86463748646430-
GWHAAZE00000006exon86461698646201-
GWHAAZE00000006exon86406098640695-
GWHAAZE00000006exon86398468639962-
GWHAAZE00000006exon86391508639242-
GWHAAZE00000006exon86380428638167-
GWHAAZE00000006exon86373348637434-
GWHAAZE00000006exon86367578636892-
GWHAAZE00000006CDS86646248664710-
GWHAAZE00000006CDS86639898664072-
GWHAAZE00000006CDS86637678663874-
GWHAAZE00000006CDS86630148663058-
GWHAAZE00000006CDS86628548662928-
GWHAAZE00000006CDS86626508662745-
GWHAAZE00000006CDS86618108661887-
GWHAAZE00000006CDS86613858661470-
GWHAAZE00000006CDS86576888657754-
GWHAAZE00000006CDS86574728657534-
GWHAAZE00000006CDS86572828657383-
GWHAAZE00000006CDS86570638657167-
GWHAAZE00000006CDS86568488656940-
GWHAAZE00000006CDS86563628656450-
GWHAAZE00000006CDS86496038649822-
GWHAAZE00000006CDS86465938646679-
GWHAAZE00000006CDS86463748646430-
GWHAAZE00000006CDS86461698646201-
GWHAAZE00000006CDS86406098640695-
GWHAAZE00000006CDS86398468639962-
GWHAAZE00000006CDS86391508639242-
GWHAAZE00000006CDS86380428638167-
GWHAAZE00000006CDS86373348637434-
GWHAAZE00000006CDS86367578636892-
Transcript Sequence

Network for GWHGAAZE020535

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04136.16Sec341162632.40E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0005801cellular_componentcis-Golgi network
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.978
SRR3591706second leaf1.637
SRR3591707mature leaf1.047
SRR3591708Shoot apex2.547
SRR3591709Stem2.062
SRR3591710White floral bud2.984
SRR3591711White flower1.919
SRR3591712Green floral bud2.908
SRR3591713Yellow flower2.142
SRP173429 SRR8316895Juvenile bud stage 14.958
SRR8316896Juvenile bud stage 20.691
SRR8316897Juvenile bud stage 0.406
SRR8316894Third green stage 8.656
SRR8316900Third green stage 19.954
SRR8316901Third green stage 20.819
SRR8316898Complete white stage 4.564
SRR8316899Complete white stage 18.456
SRR8316903Complete white stage 11.274
SRR8316902Silver flowering stage6.958
SRR8316904Silver flowering stage7.911
SRR8316905Silver flowering stage4.360
SRR8316906Gold flowering stage 11.497
SRR8316907Gold flowering stage 12.543
SRR8316908Gold flowering stage 3.903
SRP132670SRR6706286Control7.000
SRR6706287Light intensity 50%8.998
SRR6706288Light intensity 20%9.873
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.327
CNS0095593Slightly white alabastrum(diploid) 218.279
CNS0095594Slightly white alabastrum(diploid) 314.099
CNS0095595Whole white alabastrum(diploid) 216.470
CNS0095596Whole white alabastrum(diploid) 315.943
CNS0095597Whole white alabastrum(diploid) 413.802
CNS0095598Silvery flower (diploied) 115.319
CNS0095599Silvery flower (diploied) 212.175
CNS0095600Silvery flower (diploied) 316.842
CNS0095601Golden flower (diploid) 111.577
CNS0095602Golden flower (diploid) 216.146
CNS0095603Golden flower (diploid) 314.518
CNS0095604Slightly white alabastrum(tetraploid) 11.120
CNS0095605Slightly white alabastrum(tetraploid) 21.242
CNS0095606Slightly white alabastrum(tetraploid) 32.797
CNS0095607Whole white alabastrum(tetraploid) 10.716
CNS0095608Whole white alabastrum(tetraploid) 20.702
CNS0095609Whole white alabastrum(tetraploid) 31.408
CNS0095610Silvery flower (tetraploid) 12.210
CNS0095611Silvery flower (tetraploid) 21.725
CNS0095612Silvery flower (tetraploid) 31.612
CNS0095613Golden flower (tetraploid) 10.787
CNS0095614Golden flower (tetraploid) 21.297
CNS0095615Golden flower (tetraploid) 30.737
CRA001975CRR073297Stem 114.406
CRR073298Stem 211.712
CRR073299Stem 38.761
CRR073300Leaf 115.370
CRR073301Leaf 215.241
CRR073302Leaf 37.119
CRR073303Juvenile bud 18.804
CRR073304Juvenile bud 25.021
CRR073305Juvenile bud 311.489
CRR073306Third green 12.627
CRR073307Third green 21.879
CRR073308Third green 33.495
CRR073309Second white 14.171
CRR073310Second white 26.642
CRR073311Second white 35.229
CRR073312Silver flowering 13.976
CRR073313Silver flowering 24.638
CRR073314Silver flowering 34.059
CRR073315Gold flowering 13.705
CRR073316Gold flowering 23.988
CRR073317Gold flowering 32.709
CRR073318Tawny withering 17.117
CRR073319Tawny withering 29.986
CRR073320Tawny withering 38.910