Gene detail

Detail information of GWHGAAZE020555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467163.1	1.14451E-31	PREDICTED: F-box/kelch-repeat protein At3g06240-like [Citrus sinensis]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	1E-14	F-box protein CPR30
trEMBL	tr\|V4SNT6\|V4SNT6_9ROSI	5E-32	Uncharacterized protein {ECO:0000313\|EMBL:ESR38726.1}
TAIR10	AT4G12560.2	2E-12	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10216351	10217862	+
GWHAAZE00000006	mRNA	10216351	10217862	+
GWHAAZE00000006	exon	10216351	10217862	+
GWHAAZE00000006	CDS	10216351	10217862	+

Transcript Sequence
>GWHTAAZE020579 ATGGCACACAGCGGTGTTGGGGGTGTTAATAATAGTAATATGCCGGAAGATTTGTTGATTAATATTCTGTCTAGGCTGCAAGTGAAATCACTTTTGTGCTTCAAGTGTGTGAGCAAATACTGGTACACTCTCATCGAAAGCCCTGATTTTATCAAGAATCATTACCGCAATCTTAATAATCGTGACATGCTCCTTGTTCTTCATTACCTTCACCAACGGTTTATTCTTGACGATCCTGACCCTGATTGTCTTTCCGATCAGTACATTTGTAAAATGTATGGCTATGATATTGTGAGCAACAACGAACTTTATAATGTCACTAATTCTAATCGCTTCACTCCGATTGCCGATGTCAGTAGCAGCGACGATGAATGTAACCTGGACACTAGTTCCAATAAAGCCGATAGTACTACTTCCAATAATTCCGTTAGAACGTATCCAAAATCCTTGAATGAGCTGCATGCGATAAACTCATATGAGATAGACCCAGATGAGGTTAAGTCTAAGGAATTTGCGTTGGCCATGTTCCATAATGATGAGATCTGTAGAGGCCAACCCCAACCCCCTCCATATGATGACATTATTGATATTACACAAATATTCGGTAATATTTATTATTGGCACAATATTATTGGACCAGTTGACGGATTGTTTCTACTCCACAATGGTTATGGGGGTTTGCTATATAATAATAAATTGGCTTTATGGAACCTTGCTACAACTGAGTTGAGACTCCTCCCTTTACCCGACTTCAATTTTCCGCGTCCAGGACCGCCTTGTGTATATGTATTTGGATTTGGTGTAGACCCTTTGACAAACAGCTACAAGGGAGTCTGGATCCCCGAACAACAAAGGATCCCTCCAGATGAAATGCCTAGACCTCCAAATGTTGCAGTGTATAGCCTTGCTACCAATTCTTGGAGACCTTCTAATGTTGCTTCGTCTCATATCCATGAGATTTTCTATTCTAATCCGACGTATTTAAATGGAGCATGTTATTGGCTGTCTGATTGTGTAGTACCAACAAATGGTAAGTATATTCGGAATGTTAACATTGTTTCATTTGACATGGGTAGTGATGTGTTTCACGACATACGAGTTCCAGATAATTTTGCCAATTTAGAGGTCAATTCCCAAGATATTAGACTTATGTTGCACAATGACGATTCTATTGCCCTATTAGTAAGTGATTATATTAGTCCACGTGATTATGTAGTGGAATCAATTGAGATTTGGGTTATGAAGCATGAGGAGGAGGGAGGGTGTTGGACCAAACTTTTCACTCTTGGACTTGGGCCACATGTACAATTAGAAAATCCGCTTGGGTTTTGGAAGAACTATAATGAGATTTTCTTCACAACTACAACTCAAAACCTTGTTTTGTACAATAGTGATACAGACGAAATTACTCACCTTGGAGTCCAATGTGATCCTGACCCCTACAATTACAGGTATTCACTTCCGATTTTCAATTACAAGGAGAGCCTAGTTTCAGTGGGAGGACGAAAGTAG

Network for GWHGAAZE020555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	54	1.20E-08
PF07734.14	FBA_1	327	467	2.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.046
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.060
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.967
	SRR3591711	White flower	0.133
	SRR3591712	Green floral bud	0.692
	SRR3591713	Yellow flower	0.052
SRP173429	SRR8316895	Juvenile bud stage	0.015
	SRR8316896	Juvenile bud stage	0.134
	SRR8316897	Juvenile bud stage	0.191
	SRR8316894	Third green stage	0.011
	SRR8316900	Third green stage	0.157
	SRR8316901	Third green stage	0.244
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.035
	SRR8316902	Silver flowering stage	0.059
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.032
	SRR6706287	Light intensity 50%	0.075
	SRR6706288	Light intensity 20%	0.075
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.497
	CNS0095593	Slightly white alabastrum(diploid) 2	0.161
	CNS0095594	Slightly white alabastrum(diploid) 3	0.154
	CNS0095595	Whole white alabastrum(diploid) 2	0.409
	CNS0095596	Whole white alabastrum(diploid) 3	0.323
	CNS0095597	Whole white alabastrum(diploid) 4	0.381
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.923
	CNS0095600	Silvery flower (diploied) 3	0.269
	CNS0095601	Golden flower (diploid) 1	0.003
	CNS0095602	Golden flower (diploid) 2	0.131
	CNS0095603	Golden flower (diploid) 3	0.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.135
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.191
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.102
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.447
	CNS0095610	Silvery flower (tetraploid) 1	0.099
	CNS0095611	Silvery flower (tetraploid) 2	0.428
	CNS0095612	Silvery flower (tetraploid) 3	1.187
	CNS0095613	Golden flower (tetraploid) 1	0.129
	CNS0095614	Golden flower (tetraploid) 2	0.094
	CNS0095615	Golden flower (tetraploid) 3	0.822
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.086
	CRR073301	Leaf 2	0.046
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.119
	CRR073304	Juvenile bud 2	0.385
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.098
	CRR073307	Third green 2	0.114
	CRR073308	Third green 3	0.253
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.024
	CRR073312	Silver flowering 1	0.266
	CRR073313	Silver flowering 2	0.637
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.242
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.122
	CRR073318	Tawny withering 1	0.037
	CRR073319	Tawny withering 2	0.283
	CRR073320	Tawny withering 3	0.277