Gene detail

Detail information of GWHGAAZE020567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008366121.1	1.3746E-169	PREDICTED: uncharacterized protein LOC103429768 [Malus domestica]
COG	YP_004317176.1	5E-14	family 2 glycosyl transferase
trEMBL	tr\|D7U230\|D7U230_VITVI	3E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36796.3}
TAIR10	AT5G12260.1	2E-102	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	10485849	10492956	+
GWHAAZE00000006	mRNA	10485849	10492956	+
GWHAAZE00000006	exon	10485849	10485885	+
GWHAAZE00000006	exon	10486158	10486601	+
GWHAAZE00000006	exon	10491538	10491701	+
GWHAAZE00000006	exon	10491843	10492087	+
GWHAAZE00000006	exon	10492362	10492956	+
GWHAAZE00000006	CDS	10485849	10485885	+
GWHAAZE00000006	CDS	10486158	10486601	+
GWHAAZE00000006	CDS	10491538	10491701	+
GWHAAZE00000006	CDS	10491843	10492087	+
GWHAAZE00000006	CDS	10492362	10492956	+

Transcript Sequence
>GWHTAAZE020591 ATGATCATTCTACAATGTCAGACACATGCTAATGCAGTCCTCGGTTTCGACCGCCTACCTTCACTCTCTCGCTGCCTCCGCTCTCTTTCTGCTGCCGATTATGGCAATGATAGGGTAAATCTCCACATCTTTATTGACCACTTCAAAGTACCGGATTCAACTAATGGTAAGTCTGTGAATTTGGATAAGAAACTGAATGAATCTCGTCAAATTCTTGATTTTGTTGATGGGTTTTTGTGGGGATTCGGTGAGAAGATGGTGCATTACCGAACCGGGAATGTTGGGCTGCAAGCACAATGGTTGGAGGCGTGGTGGCCAAGCTCGGACAACGATTTTGCGTTTGTTGTCGAAGATGATTTGGAGGTTTCACCGCTTTATTATAGATTCATAAGGGGATTGATTGTTAACTATTACTACAATGCTTCGAATTTCAGCCCTTGGATATACGGTGCATCCTTACAGCGACCAAGGCTTGTGCCAGGTAAGCATGGAAACAAAATACAATTGGATAGAGGCACACGCATCTTCCTGTACCAGCTCATTGGCACCTGGGGTCAGCTTCTGTTCCCAAGACCTTGGAAAGAGTTCCGCTTGTGGTACGACTCCCACAAGGCCAAGGGAACCAAGCCGTTTCTTCAGGGGATGGTAACAACAGGATGGTACAAAAAGATGGGGGAGAGAATATGGACACCATGGTTCATTCAATTTATCCACGCTCGTGGCTATTTCAACATATATACCAACTTCTTACATGAGAGAGCACTCAGTGTTTCTCACAGGGATGTTGGCGTTAGTTACGGTAAAACCGCAGGGCCAGATTCCTATTTGCTTGACGAGAAGTCTCTTGATTTCAACCTTTTGGAAATGCAACCTTTGAATAATCTCAAATGTACGAGAGCTTACATGAGATCTCAAGAATCTAACCTGGAACTTATAAAGGAGTTATGGGTGAAGGCTTTTCTAATGAAGAAATGCTTAGAACAAAAGTATAACACGTGGGTCGTGGGCCCGGAGATGATTCCAGTCAGTGATGACTCGTTTCTCGAATCCTTTGATCCAAACTCCGACTTTTACGTTGGGGATGTAAACAAGCTTCTATTCGTACGGGGTTCGTCTACTGCTCAGGAAATTTGGGATGATAATTTTATGTTCAACGCTGCATTGGTGCTGAATAATAATGATTCGGGTTCTTCAGATGGAAGCAATTTTGGCTACGTAGTGGGGAAATTATTGGAGAAGAAGGGAGCGAAGAAAGTCGATGAGAAAAAATTTGGTATGAACATTATCAGCAGCAGTAGTAGTTTAAGTAGTAGGAGTAACGCAAATGTAACATCATTATTCTCTTCTGTTGAGGGTGGAAAGAAGGTAGCTTTCTGGTCAGGGGAAATGAATCCAGGTTTAGTCGAAAAACGACTCAAGGAGTTGGGTTTGTGGATTGTAGATGAGGACTCTTCTTGTACTGCTATTGTTTGTCACCCTTCTTGA

Network for GWHGAAZE020567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0239

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.334
	SRR3591706	second leaf	3.830
	SRR3591707	mature leaf	4.454
	SRR3591708	Shoot apex	4.958
	SRR3591709	Stem	4.621
	SRR3591710	White floral bud	9.056
	SRR3591711	White flower	8.198
	SRR3591712	Green floral bud	9.299
	SRR3591713	Yellow flower	6.328
SRP173429	SRR8316895	Juvenile bud stage	4.248
	SRR8316896	Juvenile bud stage	6.527
	SRR8316897	Juvenile bud stage	2.901
	SRR8316894	Third green stage	3.307
	SRR8316900	Third green stage	9.941
	SRR8316901	Third green stage	10.205
	SRR8316898	Complete white stage	1.970
	SRR8316899	Complete white stage	6.106
	SRR8316903	Complete white stage	3.879
	SRR8316902	Silver flowering stage	2.468
	SRR8316904	Silver flowering stage	3.297
	SRR8316905	Silver flowering stage	1.533
	SRR8316906	Gold flowering stage	4.676
	SRR8316907	Gold flowering stage	5.142
	SRR8316908	Gold flowering stage	5.512
SRP132670	SRR6706286	Control	9.220
	SRR6706287	Light intensity 50%	8.453
	SRR6706288	Light intensity 20%	7.984
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.056
	CNS0095593	Slightly white alabastrum(diploid) 2	7.107
	CNS0095594	Slightly white alabastrum(diploid) 3	5.976
	CNS0095595	Whole white alabastrum(diploid) 2	9.602
	CNS0095596	Whole white alabastrum(diploid) 3	11.226
	CNS0095597	Whole white alabastrum(diploid) 4	10.441
	CNS0095598	Silvery flower (diploied) 1	6.912
	CNS0095599	Silvery flower (diploied) 2	4.102
	CNS0095600	Silvery flower (diploied) 3	8.847
	CNS0095601	Golden flower (diploid) 1	3.752
	CNS0095602	Golden flower (diploid) 2	5.974
	CNS0095603	Golden flower (diploid) 3	6.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.837
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.291
	CNS0095610	Silvery flower (tetraploid) 1	7.732
	CNS0095611	Silvery flower (tetraploid) 2	7.143
	CNS0095612	Silvery flower (tetraploid) 3	7.933
	CNS0095613	Golden flower (tetraploid) 1	4.933
	CNS0095614	Golden flower (tetraploid) 2	7.202
	CNS0095615	Golden flower (tetraploid) 3	7.584
CRA001975	CRR073297	Stem 1	7.263
	CRR073298	Stem 2	6.276
	CRR073299	Stem 3	4.161
	CRR073300	Leaf 1	8.434
	CRR073301	Leaf 2	7.813
	CRR073302	Leaf 3	4.381
	CRR073303	Juvenile bud 1	6.866
	CRR073304	Juvenile bud 2	4.356
	CRR073305	Juvenile bud 3	5.083
	CRR073306	Third green 1	3.594
	CRR073307	Third green 2	3.212
	CRR073308	Third green 3	3.535
	CRR073309	Second white 1	4.271
	CRR073310	Second white 2	3.442
	CRR073311	Second white 3	3.868
	CRR073312	Silver flowering 1	4.796
	CRR073313	Silver flowering 2	5.370
	CRR073314	Silver flowering 3	1.881
	CRR073315	Gold flowering 1	3.758
	CRR073316	Gold flowering 2	3.286
	CRR073317	Gold flowering 3	2.553
	CRR073318	Tawny withering 1	4.863
	CRR073319	Tawny withering 2	5.007
	CRR073320	Tawny withering 3	6.151