Detail information of GWHGAAZE020569


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089712.12.86615E-98PREDICTED: probable lysine--tRNA ligase, cytoplasmic [Sesamum indicum]
COGYP_007091937.12E-57lysyl-tRNA synthetase
Swissprottr|Q9ZPI1|SYK_ARATH7E-12Lysine--tRNA ligase
trEMBLtr|A0A067K6G3|A0A067K6G3_JATCU3E-94Lysine--tRNA ligase {ECO:0000256|RuleBase:RU003748}
TAIR10AT3G13490.11E-74Lysyl-tRNA synthetase, class II

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1051612210518736-
GWHAAZE00000006mRNA1051612210518736-
GWHAAZE00000006exon1051612210516225-
GWHAAZE00000006exon1051637810516489-
GWHAAZE00000006exon1051710010517318-
GWHAAZE00000006exon1051823110518329-
GWHAAZE00000006exon1051873410518736-
GWHAAZE00000006CDS1051873410518736-
GWHAAZE00000006CDS1051823110518329-
GWHAAZE00000006CDS1051710010517318-
GWHAAZE00000006CDS1051637810516489-
GWHAAZE00000006CDS1051612210516225-
Transcript Sequence

Network for GWHGAAZE020569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01336.26tRNA_anti-codon791572.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04567KARS, lysS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.257
SRR3591706second leaf1.832
SRR3591707mature leaf1.232
SRR3591708Shoot apex1.816
SRR3591709Stem0.382
SRR3591710White floral bud1.047
SRR3591711White flower1.694
SRR3591712Green floral bud1.588
SRR3591713Yellow flower0.862
SRP173429 SRR8316895Juvenile bud stage 1.492
SRR8316896Juvenile bud stage 1.713
SRR8316897Juvenile bud stage 0.558
SRR8316894Third green stage 0.632
SRR8316900Third green stage 0.587
SRR8316901Third green stage 1.032
SRR8316898Complete white stage 0.218
SRR8316899Complete white stage 0.881
SRR8316903Complete white stage 0.985
SRR8316902Silver flowering stage0.069
SRR8316904Silver flowering stage0.210
SRR8316905Silver flowering stage0.093
SRR8316906Gold flowering stage 0.567
SRR8316907Gold flowering stage 0.881
SRR8316908Gold flowering stage 0.264
SRP132670SRR6706286Control0.637
SRR6706287Light intensity 50%0.766
SRR6706288Light intensity 20%0.950
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.969
CNS0095593Slightly white alabastrum(diploid) 20.447
CNS0095594Slightly white alabastrum(diploid) 31.261
CNS0095595Whole white alabastrum(diploid) 20.158
CNS0095596Whole white alabastrum(diploid) 30.011
CNS0095597Whole white alabastrum(diploid) 40.751
CNS0095598Silvery flower (diploied) 10.980
CNS0095599Silvery flower (diploied) 20.369
CNS0095600Silvery flower (diploied) 30.538
CNS0095601Golden flower (diploid) 11.271
CNS0095602Golden flower (diploid) 20.987
CNS0095603Golden flower (diploid) 30.533
CNS0095604Slightly white alabastrum(tetraploid) 10.481
CNS0095605Slightly white alabastrum(tetraploid) 20.205
CNS0095606Slightly white alabastrum(tetraploid) 31.070
CNS0095607Whole white alabastrum(tetraploid) 10.267
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.431
CNS0095610Silvery flower (tetraploid) 10.768
CNS0095611Silvery flower (tetraploid) 20.271
CNS0095612Silvery flower (tetraploid) 30.217
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.390
CNS0095615Golden flower (tetraploid) 30.326
CRA001975CRR073297Stem 11.467
CRR073298Stem 21.214
CRR073299Stem 30.720
CRR073300Leaf 12.471
CRR073301Leaf 20.376
CRR073302Leaf 30.637
CRR073303Juvenile bud 10.378
CRR073304Juvenile bud 20.093
CRR073305Juvenile bud 30.523
CRR073306Third green 10.119
CRR073307Third green 20.201
CRR073308Third green 30.000
CRR073309Second white 10.011
CRR073310Second white 20.042
CRR073311Second white 30.111
CRR073312Silver flowering 10.089
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.157
CRR073315Gold flowering 11.552
CRR073316Gold flowering 20.185
CRR073317Gold flowering 30.216
CRR073318Tawny withering 10.524
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.192