Detail information of GWHGAAZE020577


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010112680.11.14226E-61Lysine--tRNA ligase [Morus notabilis]
COGYP_003888545.14E-37lysyl-tRNA synthetase
Swissprottr|Q6F2U9|SYK_ORYSJ3E-27Lysine--tRNA ligase
trEMBLtr|W9SZJ9|W9SZJ9_9ROSA4E-62Lysine--tRNA ligase {ECO:0000313|EMBL:EXC34535.1}
TAIR10AT3G13490.14E-51Lysyl-tRNA synthetase, class II

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1062661110628789-
GWHAAZE00000006mRNA1062661110628789-
GWHAAZE00000006exon1062869410628789-
GWHAAZE00000006exon1062775610627923-
GWHAAZE00000006exon1062661110626973-
GWHAAZE00000006CDS1062869410628789-
GWHAAZE00000006CDS1062775610627923-
GWHAAZE00000006CDS1062688110626973-
GWHAAZE00000006three_prime_UTR1062661110626880-
Transcript Sequence

Network for GWHGAAZE020577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00152.21tRNA-synt_251146.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04567KARS, lysS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 7.543
SRR8316896Juvenile bud stage 11.945
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 3.745
SRR8316900Third green stage 8.458
SRR8316901Third green stage 10.298
SRR8316898Complete white stage 3.879
SRR8316899Complete white stage 13.314
SRR8316903Complete white stage 7.095
SRR8316902Silver flowering stage5.250
SRR8316904Silver flowering stage5.150
SRR8316905Silver flowering stage3.058
SRR8316906Gold flowering stage 9.509
SRR8316907Gold flowering stage 10.133
SRR8316908Gold flowering stage 3.028
SRP132670SRR6706286Control6.658
SRR6706287Light intensity 50%7.675
SRR6706288Light intensity 20%8.937
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.283
CNS0095593Slightly white alabastrum(diploid) 27.623
CNS0095594Slightly white alabastrum(diploid) 37.627
CNS0095595Whole white alabastrum(diploid) 210.119
CNS0095596Whole white alabastrum(diploid) 37.573
CNS0095597Whole white alabastrum(diploid) 47.591
CNS0095598Silvery flower (diploied) 119.544
CNS0095599Silvery flower (diploied) 213.640
CNS0095600Silvery flower (diploied) 314.066
CNS0095601Golden flower (diploid) 118.141
CNS0095602Golden flower (diploid) 210.176
CNS0095603Golden flower (diploid) 310.928
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.072
CNS0095606Slightly white alabastrum(tetraploid) 30.079
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.009
CNS0095612Silvery flower (tetraploid) 30.055
CNS0095613Golden flower (tetraploid) 10.058
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.055
CRA001975CRR073297Stem 111.510
CRR073298Stem 211.424
CRR073299Stem 35.177
CRR073300Leaf 18.791
CRR073301Leaf 210.418
CRR073302Leaf 34.022
CRR073303Juvenile bud 15.816
CRR073304Juvenile bud 22.409
CRR073305Juvenile bud 37.907
CRR073306Third green 10.961
CRR073307Third green 21.042
CRR073308Third green 30.787
CRR073309Second white 10.802
CRR073310Second white 20.916
CRR073311Second white 31.102
CRR073312Silver flowering 11.154
CRR073313Silver flowering 20.196
CRR073314Silver flowering 30.778
CRR073315Gold flowering 14.922
CRR073316Gold flowering 28.506
CRR073317Gold flowering 33.613
CRR073318Tawny withering 14.547
CRR073319Tawny withering 27.544
CRR073320Tawny withering 37.085