Gene detail

Detail information of GWHGAAZE020603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHF22089.1	0	CYP79D33 [Maesa lanceolata]
COG	YP_003950164.1	1E-22	cytochrome p450
Swissprot	tr\|Q9M7B8\|C79D1_MANES	0	Valine N-monooxygenase 1
trEMBL	tr\|W0FG45\|W0FG45_POPTR	0	Cytochrome P450 {ECO:0000313\|EMBL:AHF20912.1}
TAIR10	AT5G05260.1	1E-153	cytochrome p450 79a2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	12287466	12289328	+
GWHAAZE00000006	mRNA	12287466	12289328	+
GWHAAZE00000006	exon	12287466	12288461	+
GWHAAZE00000006	exon	12288553	12289172	+
GWHAAZE00000006	exon	12289307	12289328	+
GWHAAZE00000006	CDS	12287466	12288461	+
GWHAAZE00000006	CDS	12288553	12289172	+
GWHAAZE00000006	CDS	12289307	12289328	+

Transcript Sequence
>GWHTAAZE020627 CAGTTTAGCAACACGTGCAAAATTCCAAGTACATTTATATTGAGCATGGAAAACCACTTCGTCACAACACCTAATTCCTCAACCTTTTCCACAGCTATGCTTCTGTTAGCAGTTTGTATCTTCATGGTCATATATATACTAAGAAAAAGGTCACACCACCTCCCACCGGCCCAATGCAATGGCCTATTACCGAGCTCAGACGCATTGTTTACATGTAAGCCAGTGTTTCGATGGATTCACAGGCTTATGTGTGAGATGAATGCTGAAATCATCTGTATCCGCTTCCTGAACACCCATGTCATTGTTGTATCTAGTGATACTTTGGCAAAAGAGTTCTTGAAGACACAAGATATTGTGTTTTCTTCAAGACCTGTTTCTTTAGCTTCTGAAATAGCTAGTGGTGGATACCTGACAACTGCCTTTAGTCCCATGGGAGAGCAATGGAAAAAAATGAGGAGAATCCTCGCCACTGAAATCCTTTCCAAGAATAGACACAAGTGGCTTACGAGCAAGAGAAACGAGGAGGCCGACCACTTAGTCCGCTATGTCCACAACCAAGCGAGTAGCAACTTGATAGGGGGGATTGTCAACATGAGGGTCGCTGCTCGACATTACTGTGGTAATTTGATGAGAAATTTGATATTTAGCAAGCGATTCTTTGGAGTTGGGATGCAAGATGGAGGACCAGGAGCTGAAGAAGAAGAGCATATCAGCGCGCTTTTCAAAATACTCAATTACACATTTTCCTTTTGTGTTTCTGATTACGTTGGGTTTTTACGTGGACGGTTTGATTTAGATGGTCACAAAAATATCATTAGAATGGCAGTTGAAAGTGTGAGGAAGTATCAAGATCCTTTAATAGACGAGAGAGCTCAACAATGGGCAAAAGGTTCAAAGACAGTGAAAGAAGACTTGCTTGATGTCATGCTCTCTCTCCAGAATGAAGATTGGGGCACGAAATTGTTGTCTGTTGATGAGATCAAAGCCCAAGTTATTGAAATGATGCTGGCATCAGTGGACAATCCATCAAATGTAGTTGAGTGGGCACTTGCAGAAATGATAAATCGACCTGCAACACTTGAAAGGGCGGTAGAAGAATTGGATAGAGTTGTAGGGCGACACAGGTTGGTCCAAGAATCAGATTTTCCAAATCTGAACTACATTAAGTCATGTGCAAGGGAGGCCTTTAGACTCCATCCTATTGCACCTTTTAACATCCCGCATGTATCCATGTCTGATACGACAATTGCTGGATACTTCATACAAAAGGGTAGCCATGTGCTTTTGAGCCGACCAGGTCTTGGACGCAACCCAAAAATATGGGATGATCCATTAACCTTTAATCCAGAGCGACACTTGAGAGACAATGGCACTGATGAAGTGGCACTAACAGAGTCAGAGCTTCGACTTTTGTCTTTTAGTAGTGGGCGAAGAGGATGTGTAGGAGTTCTGCTAGGTTCGACAATGACAACAATGCTGTTAGCGAGGCTTCTTCAATGCTTCACCTGGAGCGCTTCACCTATTGAGCCACACATTGACCTCAGCGAGTCATATGAAAGTTTGGTTATGGCAAAACCTTTGCATGCACTCGCTAAGCCGCGTTTGGGAGATAATTTGGCAAGGAGGATTGTAACTTAA

Network for GWHGAAZE020603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	88	525	1.20E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12153	CYP79A2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Cyanoamino acid metabolism	map00460
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.120
	SRR3591706	second leaf	3.154
	SRR3591707	mature leaf	3.342
	SRR3591708	Shoot apex	0.623
	SRR3591709	Stem	0.050
	SRR3591710	White floral bud	1.792
	SRR3591711	White flower	0.046
	SRR3591712	Green floral bud	0.193
	SRR3591713	Yellow flower	0.148
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.084
	SRR8316897	Juvenile bud stage	0.078
	SRR8316894	Third green stage	0.070
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	3.614
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	4.292
	SRR8316902	Silver flowering stage	2.429
	SRR8316904	Silver flowering stage	9.223
	SRR8316905	Silver flowering stage	8.076
	SRR8316906	Gold flowering stage	3.532
	SRR8316907	Gold flowering stage	9.336
	SRR8316908	Gold flowering stage	2.653
SRP132670	SRR6706286	Control	0.035
	SRR6706287	Light intensity 50%	0.426
	SRR6706288	Light intensity 20%	0.035
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.004
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.006
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.169
	CNS0095599	Silvery flower (diploied) 2	0.300
	CNS0095600	Silvery flower (diploied) 3	1.392
	CNS0095601	Golden flower (diploid) 1	0.211
	CNS0095602	Golden flower (diploid) 2	0.583
	CNS0095603	Golden flower (diploid) 3	0.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.003
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.468
	CNS0095611	Silvery flower (tetraploid) 2	0.330
	CNS0095612	Silvery flower (tetraploid) 3	4.442
	CNS0095613	Golden flower (tetraploid) 1	0.311
	CNS0095614	Golden flower (tetraploid) 2	0.062
	CNS0095615	Golden flower (tetraploid) 3	0.622
CRA001975	CRR073297	Stem 1	0.054
	CRR073298	Stem 2	0.397
	CRR073299	Stem 3	0.145
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.079
	CRR073302	Leaf 3	0.091
	CRR073303	Juvenile bud 1	0.370
	CRR073304	Juvenile bud 2	12.109
	CRR073305	Juvenile bud 3	0.082
	CRR073306	Third green 1	116.736
	CRR073307	Third green 2	181.213
	CRR073308	Third green 3	100.836
	CRR073309	Second white 1	31.178
	CRR073310	Second white 2	26.005
	CRR073311	Second white 3	33.943
	CRR073312	Silver flowering 1	4.931
	CRR073313	Silver flowering 2	5.451
	CRR073314	Silver flowering 3	5.516
	CRR073315	Gold flowering 1	0.024
	CRR073316	Gold flowering 2	0.114
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.016
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000