Gene detail

Detail information of GWHGAAZE020611

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG04035.1	1.2183E-161	Tyrosine N-monooxygenase [Gossypium arboreum]
COG	YP_003950164.1	3E-24	cytochrome p450
Swissprot	tr\|Q9M7B8\|C79D1_MANES	5E-155	Valine N-monooxygenase 1
trEMBL	tr\|W0FBV8\|W0FBV8_POPTR	6E-160	Cytochrome P450 {ECO:0000313\|EMBL:AHF20913.1}
TAIR10	AT4G39950.1	3E-118	cytochrome P450, family 79, subfamily B, polypeptide 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	12577454	12580254	+
GWHAAZE00000006	mRNA	12577454	12580254	+
GWHAAZE00000006	exon	12577454	12577753	+
GWHAAZE00000006	exon	12577859	12577941	+
GWHAAZE00000006	exon	12578004	12578199	+
GWHAAZE00000006	exon	12578289	12578853	+
GWHAAZE00000006	exon	12580202	12580254	+
GWHAAZE00000006	CDS	12577454	12577753	+
GWHAAZE00000006	CDS	12577859	12577941	+
GWHAAZE00000006	CDS	12578004	12578199	+
GWHAAZE00000006	CDS	12578289	12578853	+
GWHAAZE00000006	CDS	12580202	12580254	+

Transcript Sequence
>GWHTAAZE020635 ATGCATGAGATGAATACAGAAATCATATGTGTCCGCTTCCTAAACACCCATGTCATTGTTGTGTCTAGCGATGATTTGGCAAAAGAGTTCTTAAAGACACAAGATGCCGTGTTTTCTTCAAGACCTATTTCTTTAGCTTCTGAAATCACCAGTGGTGGATACATGGCAACTATCTTTAGTCCAATGGGAGAGCAATGGAAAAAAATGAGGAGAATCCTTGCCACTGAAATCCTTTCCAAGAATAGACACAAGTGGCTTCTGAACAAGAGAAATGAAGAGGCCGACTACTTAGTCCACCATCGATTCTTTGGAGCTGGGATGCAAGATGGAGGACCAGGAGCTGAAGAAGAAGAGCATATCAACGCGATCTTCTCAATACTTAAATGGTCAAGAAAAAACATCGAAAAGGCGGTTGAAAGTGTGAGGAAGTATCATGATCCTTTAATAGACAAGAGAGCTCAACAATGGGCGAAAGGAACCAAGACAGTGAAAGAAGACTTGCTTGATGTCATGATCTCTCTCCAGAGTGAAGCGGGCATGACTTTATTGTCCGTTGATGAGATTAAAGCCCAAGTTATTGAAATGATGCTGGCATCGGTGGACAATCCATCGAATGCAGTTGAGTGGGCACTTGCAGAAATGATAAATCAAACTGAGACACTTCAAAGGGCAGTAGAAGAATTGGATAGAGTGGTAGGGGCACACAGGTTGGTCCAGGAATCAGATTTGCCAAAGCTGAACTACATTAAGTCATGTATAAGGGAGGCCTTTAGACTCCATCCTTTTGTAGCTTTTAACGTCCCGCATGTATCCATGTCTGATACGACAGTCGCTGGCTACTTCATACCAAAGGGTAGCCATGTTATTTTGAGTCGATCAGGTCTTGGACACAACCCTAAAATCTGGGACGACCCACTGACCTTTAATCCAGAGCGACACTTGAGGGACGATGGCTCTGAAGTGCTACTAACAGAGTCAGAGCTTCGACTTTTATCTTTTAGTAGTGGGCGAAGAGGATGCACAGGAGTGTTGTTAGGTTCAACAATGACAACAATGCTACTAGCGAGACTTCTTCAATGCTTCACCTGGAGCGCTCCACCTACCGAGCCACGCATTGACCTTAGTGATTCATATGACAGTTTGGTTGAAAAAGTGCCAAAGCTTATATACATACACACACTTATAGTACCTAATTAA

Network for GWHGAAZE020611

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	6	99	2.70E-06
PF00067.23	p450	123	373	3.30E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12153	CYP79A2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Cyanoamino acid metabolism	map00460
		Glucosinolate biosynthesis	map00966

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.062
	SRR3591711	White flower	0.628
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.478
SRP173429	SRR8316895	Juvenile bud stage	0.088
	SRR8316896	Juvenile bud stage	0.032
	SRR8316897	Juvenile bud stage	0.139
	SRR8316894	Third green stage	0.022
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.041
	SRR8316898	Complete white stage	0.171
	SRR8316899	Complete white stage	0.014
	SRR8316903	Complete white stage	0.229
	SRR8316902	Silver flowering stage	231.188
	SRR8316904	Silver flowering stage	289.777
	SRR8316905	Silver flowering stage	208.991
	SRR8316906	Gold flowering stage	566.951
	SRR8316907	Gold flowering stage	588.193
	SRR8316908	Gold flowering stage	279.518
SRP132670	SRR6706286	Control	0.063
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.091
	CNS0095593	Slightly white alabastrum(diploid) 2	0.345
	CNS0095594	Slightly white alabastrum(diploid) 3	0.099
	CNS0095595	Whole white alabastrum(diploid) 2	0.159
	CNS0095596	Whole white alabastrum(diploid) 3	0.030
	CNS0095597	Whole white alabastrum(diploid) 4	0.063
	CNS0095598	Silvery flower (diploied) 1	37.890
	CNS0095599	Silvery flower (diploied) 2	36.635
	CNS0095600	Silvery flower (diploied) 3	157.497
	CNS0095601	Golden flower (diploid) 1	63.381
	CNS0095602	Golden flower (diploid) 2	88.615
	CNS0095603	Golden flower (diploid) 3	86.080
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.072
	CNS0095610	Silvery flower (tetraploid) 1	44.247
	CNS0095611	Silvery flower (tetraploid) 2	113.585
	CNS0095612	Silvery flower (tetraploid) 3	1051.190
	CNS0095613	Golden flower (tetraploid) 1	89.374
	CNS0095614	Golden flower (tetraploid) 2	39.319
	CNS0095615	Golden flower (tetraploid) 3	186.392
CRA001975	CRR073297	Stem 1	1.191
	CRR073298	Stem 2	1.290
	CRR073299	Stem 3	1.167
	CRR073300	Leaf 1	0.945
	CRR073301	Leaf 2	0.923
	CRR073302	Leaf 3	2.177
	CRR073303	Juvenile bud 1	0.826
	CRR073304	Juvenile bud 2	0.873
	CRR073305	Juvenile bud 3	1.472
	CRR073306	Third green 1	1189.079
	CRR073307	Third green 2	658.387
	CRR073308	Third green 3	864.955
	CRR073309	Second white 1	1687.575
	CRR073310	Second white 2	1536.072
	CRR073311	Second white 3	1649.377
	CRR073312	Silver flowering 1	1334.022
	CRR073313	Silver flowering 2	1183.273
	CRR073314	Silver flowering 3	897.560
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	0.413
	CRR073317	Gold flowering 3	0.281
	CRR073318	Tawny withering 1	0.227
	CRR073319	Tawny withering 2	0.196
	CRR073320	Tawny withering 3	0.044