Detail information of GWHGAAZE020641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN76587.10hypothetical protein VITISV_020288 [Vitis vinifera]
COGNP_459671.16E-86glutaminyl-tRNA synthetase
Swissprottr|P52780|SYQ_LUPLU1E-65Glutamine--tRNA ligase
trEMBLtr|A5B9C3|A5B9C3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN76587.1}
TAIR10AT5G26710.10Glutamyl/glutaminyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1554535315550702-
GWHAAZE00000006mRNA1554535315550702-
GWHAAZE00000006exon1555060715550702-
GWHAAZE00000006exon1555028215550480-
GWHAAZE00000006exon1554847715549525-
GWHAAZE00000006exon1554646115546925-
GWHAAZE00000006exon1554535315545571-
GWHAAZE00000006CDS1555060715550702-
GWHAAZE00000006CDS1555028215550480-
GWHAAZE00000006CDS1554847715549525-
GWHAAZE00000006CDS1554646115546925-
GWHAAZE00000006CDS1554535315545571-
Transcript Sequence

Network for GWHGAAZE020641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00749.22tRNA-synt_1c1674719.10E-101
PF03950.19tRNA-synt_1c_C4746504.20E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01885EARS, gltX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006412biological_processtranslation
GO:0043039biological_processtRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0004818molecular_functionglutamate-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.742
SRR3591706second leaf2.148
SRR3591707mature leaf3.185
SRR3591708Shoot apex5.138
SRR3591709Stem4.487
SRR3591710White floral bud4.084
SRR3591711White flower4.936
SRR3591712Green floral bud5.095
SRR3591713Yellow flower2.939
SRP173429 SRR8316895Juvenile bud stage 2.997
SRR8316896Juvenile bud stage 3.943
SRR8316897Juvenile bud stage 2.694
SRR8316894Third green stage 1.824
SRR8316900Third green stage 4.097
SRR8316901Third green stage 3.365
SRR8316898Complete white stage 1.143
SRR8316899Complete white stage 4.328
SRR8316903Complete white stage 1.904
SRR8316902Silver flowering stage1.125
SRR8316904Silver flowering stage2.272
SRR8316905Silver flowering stage0.792
SRR8316906Gold flowering stage 2.964
SRR8316907Gold flowering stage 2.105
SRR8316908Gold flowering stage 2.419
SRP132670SRR6706286Control5.617
SRR6706287Light intensity 50%5.743
SRR6706288Light intensity 20%5.721
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.286
CNS0095593Slightly white alabastrum(diploid) 23.208
CNS0095594Slightly white alabastrum(diploid) 32.517
CNS0095595Whole white alabastrum(diploid) 22.672
CNS0095596Whole white alabastrum(diploid) 31.257
CNS0095597Whole white alabastrum(diploid) 41.451
CNS0095598Silvery flower (diploied) 13.482
CNS0095599Silvery flower (diploied) 23.288
CNS0095600Silvery flower (diploied) 33.871
CNS0095601Golden flower (diploid) 12.694
CNS0095602Golden flower (diploid) 23.626
CNS0095603Golden flower (diploid) 33.433
CNS0095604Slightly white alabastrum(tetraploid) 12.753
CNS0095605Slightly white alabastrum(tetraploid) 22.413
CNS0095606Slightly white alabastrum(tetraploid) 36.751
CNS0095607Whole white alabastrum(tetraploid) 11.964
CNS0095608Whole white alabastrum(tetraploid) 21.437
CNS0095609Whole white alabastrum(tetraploid) 35.110
CNS0095610Silvery flower (tetraploid) 15.883
CNS0095611Silvery flower (tetraploid) 25.340
CNS0095612Silvery flower (tetraploid) 32.761
CNS0095613Golden flower (tetraploid) 11.984
CNS0095614Golden flower (tetraploid) 23.715
CNS0095615Golden flower (tetraploid) 32.657
CRA001975CRR073297Stem 16.656
CRR073298Stem 25.760
CRR073299Stem 32.751
CRR073300Leaf 15.383
CRR073301Leaf 25.003
CRR073302Leaf 32.224
CRR073303Juvenile bud 12.522
CRR073304Juvenile bud 21.528
CRR073305Juvenile bud 32.456
CRR073306Third green 10.414
CRR073307Third green 20.824
CRR073308Third green 30.436
CRR073309Second white 10.342
CRR073310Second white 21.362
CRR073311Second white 30.469
CRR073312Silver flowering 10.280
CRR073313Silver flowering 20.777
CRR073314Silver flowering 30.424
CRR073315Gold flowering 11.256
CRR073316Gold flowering 22.656
CRR073317Gold flowering 30.488
CRR073318Tawny withering 13.010
CRR073319Tawny withering 22.359
CRR073320Tawny withering 31.959