Detail information of GWHGAAZE020645


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273935.16.23606E-96PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Vitis vinifera]
COGYP_001536464.13E-10SRA-YDG domain-containing protein
Swissprottr|Q9FF80|SUVH1_ARATH2E-80Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBLtr|F6HIW8|F6HIW8_VITVI2E-96Putative uncharacterized protein {ECO:0000313|EMBL:CCB52193.1}
TAIR10AT5G04940.28E-70SU(VAR)3-9 homolog 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1569699015698201-
GWHAAZE00000006mRNA1569699015698201-
GWHAAZE00000006exon1569699015697622-
GWHAAZE00000006exon1569790515698201-
GWHAAZE00000006CDS1569790515698201-
GWHAAZE00000006CDS1569699015697622-
Transcript Sequence

Network for GWHGAAZE020645

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02182.18SAD_SRA11992.10E-23
PF05033.17Pre-SET1001581.00E-07
PF00856.29SET1773084.10E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0034968biological_processhistone lysine methylation
GO:0005634cellular_componentnucleus
GO:0008270molecular_functionzinc ion binding
GO:0018024molecular_functionhistone-lysine N-methyltransferase activity
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE020645.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.574
SRR3591706second leaf4.105
SRR3591707mature leaf5.910
SRR3591708Shoot apex5.435
SRR3591709Stem6.155
SRR3591710White floral bud4.272
SRR3591711White flower6.332
SRR3591712Green floral bud4.291
SRR3591713Yellow flower4.197
SRP173429 SRR8316895Juvenile bud stage 4.140
SRR8316896Juvenile bud stage 6.290
SRR8316897Juvenile bud stage 1.186
SRR8316894Third green stage 1.813
SRR8316900Third green stage 5.527
SRR8316901Third green stage 4.513
SRR8316898Complete white stage 3.287
SRR8316899Complete white stage 6.234
SRR8316903Complete white stage 2.973
SRR8316902Silver flowering stage2.615
SRR8316904Silver flowering stage3.855
SRR8316905Silver flowering stage1.642
SRR8316906Gold flowering stage 6.532
SRR8316907Gold flowering stage 4.421
SRR8316908Gold flowering stage 4.248
SRP132670SRR6706286Control1.674
SRR6706287Light intensity 50%1.906
SRR6706288Light intensity 20%1.977
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.383
CNS0095593Slightly white alabastrum(diploid) 23.206
CNS0095594Slightly white alabastrum(diploid) 31.753
CNS0095595Whole white alabastrum(diploid) 23.818
CNS0095596Whole white alabastrum(diploid) 33.376
CNS0095597Whole white alabastrum(diploid) 43.009
CNS0095598Silvery flower (diploied) 15.448
CNS0095599Silvery flower (diploied) 23.580
CNS0095600Silvery flower (diploied) 35.794
CNS0095601Golden flower (diploid) 14.095
CNS0095602Golden flower (diploid) 23.933
CNS0095603Golden flower (diploid) 34.730
CNS0095604Slightly white alabastrum(tetraploid) 15.954
CNS0095605Slightly white alabastrum(tetraploid) 24.006
CNS0095606Slightly white alabastrum(tetraploid) 36.606
CNS0095607Whole white alabastrum(tetraploid) 12.492
CNS0095608Whole white alabastrum(tetraploid) 22.817
CNS0095609Whole white alabastrum(tetraploid) 36.517
CNS0095610Silvery flower (tetraploid) 16.754
CNS0095611Silvery flower (tetraploid) 29.783
CNS0095612Silvery flower (tetraploid) 36.767
CNS0095613Golden flower (tetraploid) 15.740
CNS0095614Golden flower (tetraploid) 27.176
CNS0095615Golden flower (tetraploid) 34.077
CRA001975CRR073297Stem 12.327
CRR073298Stem 22.490
CRR073299Stem 32.230
CRR073300Leaf 12.371
CRR073301Leaf 23.169
CRR073302Leaf 31.729
CRR073303Juvenile bud 11.644
CRR073304Juvenile bud 21.119
CRR073305Juvenile bud 31.571
CRR073306Third green 11.213
CRR073307Third green 20.744
CRR073308Third green 30.545
CRR073309Second white 10.927
CRR073310Second white 22.228
CRR073311Second white 30.839
CRR073312Silver flowering 10.766
CRR073313Silver flowering 20.525
CRR073314Silver flowering 30.611
CRR073315Gold flowering 11.617
CRR073316Gold flowering 22.782
CRR073317Gold flowering 30.780
CRR073318Tawny withering 11.626
CRR073319Tawny withering 22.674
CRR073320Tawny withering 32.736