Gene detail

Detail information of GWHGAAZE020646

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI22402.3	5.1389E-100	unnamed protein product [Vitis vinifera]
COG	YP_007056377.1	0.000000006	Leucine Rich Repeat (LRR)-containing protein
Swissprot	tr\|Q940K0\|DRL15_ARATH	4E-28	Probable disease resistance protein At1g61180
trEMBL	tr\|B9T074\|B9T074_RICCO	1E-88	Disease resistance protein RPS2, putative {ECO:0000313\|EMBL:EEF30739.1}
TAIR10	AT1G61190.1	3E-16	LRR and NB-ARC domains-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	15716922	15721562	+
GWHAAZE00000006	mRNA	15716922	15721562	+
GWHAAZE00000006	exon	15716922	15717876	+
GWHAAZE00000006	exon	15718008	15718204	+
GWHAAZE00000006	exon	15718281	15718339	+
GWHAAZE00000006	exon	15718462	15719281	+
GWHAAZE00000006	exon	15719372	15719773	+
GWHAAZE00000006	exon	15720951	15721562	+
GWHAAZE00000006	CDS	15716922	15717876	+
GWHAAZE00000006	CDS	15718008	15718204	+
GWHAAZE00000006	CDS	15718281	15718339	+
GWHAAZE00000006	CDS	15718462	15719281	+
GWHAAZE00000006	CDS	15719372	15719773	+
GWHAAZE00000006	CDS	15720951	15721562	+

Transcript Sequence
>GWHTAAZE020670 ATGGCGGAGGGGATTGCATTTTCCTTTCTGGGTAAAATATCAGAATACTTGGTGGCTCCTATTGGGCGACAGTTTGGATATGTGTTTCGCTACAATGGCAATATTAAGGAAATGACAAGGAAAGTTGAGGACCTGGAAACCACGAGTCGTAGGGTGAAACTATTGGTAGAAGCAGGCAACAACAATTGCGAAGTCATTGGACCTGATGTTGACCTGTGGCTGAAGCGCGTGGAAGAGAAAATGGAAGAGGCAAATTCCATTTTGTTAGATAAAGAAAAGGTTGGAAAGGGGTGCTTGAACGAGTGGTGTCTACATTTCAAGTCGCGTTATACGGTAAGCAGGAAAGCAACGAAGAGAACTCAAGATCTAGTTGACCTCATAGATGCTGGGAATTTCCCTAGGGTCACTTATCCCGGACCAGCATTGGGGAAAGTGCCTAAATCTTCAGAAGATAAGAAGAAAACTCAGCTTGCTGATGAGGTCCAAGTAGATGGACCCTTGGTACCAGATTTAGCGATTGCATCAACATCCAGTAGTAGTTCTGGTGGACTTGAGTCAAGATTGGCCATTATGAGAAGTGTCATGGAAGCTATTAGGGATGACAACATTCGCACCATAGGGATATGCGGCATGGGAGGAGGGAAAACCACCTTGGTGAATGAAGTTGATAGAATCGCAAGGGAGGAGCGTTTGTTTGATGAAGTTGTGATGGCAGTTGTTTCCCAACAGCCAAATGTTACAAGAATTCAGCGTGATATTGCAGACTTCCTGAATTTGCAACTTAAAGAACAAAATATTATGGCAAGAGCTAGTCAGCTACATAAGAGGTTGACTCAAAATGGATCAATAGATAAATCTAAAAGGATTCTCATAATACTGGATGACTTGTGGAAGAAACTCGATTTGAAGGAAGTAGGAATTCCTTTTGGAGATGATCATTCGGTTGCAAAATCATCGAAAGAAATTGTGGAGGAATGCGGAGGGTTGCCCATTGCGATTACCATAATTGCAATGGTGCTTGCAGAGAAAGAAGAACACACATGGAACTATGTGCTTAGGCAACTGAAAAGATCTTCGCTTGAAGAGCAAGCAGCAGTTTATAAAGTATTCAAGCTGAGCTATGATATTCTGGAACCCAAGGAAATGAAAGATGTTTTTAAAAGGTGTACACGCTGCACCGAGGCAAGACAGAATCGCATGAGCATGTTCAGGATTGAAGAAGTGGCCAATGGAAGATATATGCCAACAATACACTTCAGTTTCAATGCAATGTGTGAAATGGATGAGCTTCCAAATGAACTGAAATACCCATCTCATCTCAAGCTTTTGCAGATGTGGGGTTCCAATTCTCGCCCTTCTAAATTCCCAGAAAGACTTGATGAAATTGTGGGGGAACTACAAGTTTTAGCTTTGAGGCATATGTCTATTTCGTCATTGCCTGGATCTGTTGAACGGTTGAGTAACCTAAGAACTCTGTCTCTATGTCACTGTGAATTAAATAAAGATGTATCTACGATTGGAAATATAGAGAAACTGGAAATACTAAGCTTTGTTGGCTCTGATATCTCAGAGTTGCCGAGGGAAATTGGAAAATTAAGTTGGCTAAGATTATTGGATTTGACAGGGTGCAGAAAGTTGCTAAAAATAGCTCCTGGTGTCCTATCAAAACTAGATCGCCTTGAAGAGCTGTACATGAGAGGAACCCCAATCCGCTGGGATTACCATACAAGTTTCGTTGAATTGAAACAGTTGTCTAATCGGCTGGTTGCCATTGATATTGACATACCATACAAGTTTCTATCTTTAGGCTTGAACTTAGAGAACCTGGAAAAATTCAGGATCTCTGTTGGAATTGAGGCTGTTGCAACCGAGTATATTGAGGAAATACATTTGAAAAAGCAGTCGTCCCAAAACGCTTTATTCCTGGAAGCTGATGAGATTGCTCCACTGAAGTGTTTACTTAAGGCGTTGTGCAGGAAGACTGAAATTCTGGATGTGCAAGTGAAGGATCTGAAGAACCTTTGCAATGAGAGCATCAATATACATTCTTCACCATTGGTGCCAACTCCGCCCTTTGGGAACCTAAGAACTCTGGAATTGATTCATTGTAGCAAATTGAGAAGCATATTTTCACTGTCTATCGCCAGAGGTTTGATTAACCTTGAAACACTGGAAATTTTAGATTGCTCAAGGATTGTAGAAATATTTTCCAAGGAGAGGGGTGATGATGATCAAGATGGGAAGGAGGCAGTTGAGTTCCTCAAATTGAAAAAAATAAAGCTTTTCAATCTACCAAACTTGGTTTCTTTCTGCAAAGCTGCTGTGGATGAAGTTAAGTTTCCTCAATTGAAGGATTTGGAACTTGTCAAACTGCCGAAGCTCACTAGTATTTATGCTTTTTCTTCAACCAACCATCCCTTCTTCCATCAAAAGGTTACATTAAGTAACCTGAAAGTGTTGCAAGTCTCTGTAATAGATAACATGACGACCGTTTTTCCAGAAAATGTGATACCACAGCTGCAGAGTCTTGAATCCGTGCGTGTAGAGTTTTCTAGTTCAGTAGAAGTGGTTTTCGACCTCCAAGGATCAAACCTCAATGAAGGGCATCATCAAGTATTTTCTCAGTTCCAAGGCATTTCTTTGAAAAGTCTACCTAGGCTAACAAGTGTATGGAAGTTGTGTCCCCGTGTAGTTCCCGACTTCCAAAATCTGAAATCATTATTTGTAAGACAATGTGATAGTTTGAGGCAGTTATTCACACCTTCCATGGCAAAAACTCTTGTGAGGCTTGAGGATCTAATAGTAAATCACTGTGAGATTTTGGAAGCAATTGTAGCAGCGGAGAAAGGGGAAGAAGATGAAAAAGAGTTTACAACTGAAGAAGCAATCTTGTTCCCTAAGCTAACTGTTCTTGATATCACGATGGTGCCAAATTTGTTGATGATTTTGCCCGAGCCTTACTCTTTCAATTGGTCATCCTTGAAACGCGTCCAGCTGAAAGATAAGTGCCATTTGCTAAGGCGACCAGATCAAGTATTGGTTTAG

Network for GWHGAAZE020646

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0105

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	198	313	5.90E-16
PF00931.23	NB-ARC	315	375	1.40E-06

Protein Sequence

>GWHPAAZE020659
MAEGIAFSFLGKISEYLVAPIGRQFGYVFRYNGNIKEMTRKVEDLETTSRRVKLLVEAGNNNCEVIGPDVDLWLKRVEEKMEEANSILLDKEKVGKGCLNEWCLHFKSRYTVSRKATKRTQDLVDLIDAGNFPRVTYPGPALGKVPKSSEDKKKTQLADEVQVDGPLVPDLAIASTSSSSSGGLESRLAIMRSVMEAIRDDNIRTIGICGMGGGKTTLVNEVDRIAREERLFDEVVMAVVSQQPNVTRIQRDIADFLNLQLKEQNIMARASQLHKRLTQNGSIDKSKRILIILDDLWKKLDLKEVGIPFGDDHSVAKSSKEIVEECGGLPIAITIIAMVLAEKEEHTWNYVLRQLKRSSLEEQAAVYKVFKLSYDILEPKEMKDVFKRCTRCTEARQNRMSMFRIEEVANGRYMPTIHFSFNAMCEMDELPNELKYPSHLKLLQMWGSNSRPSKFPERLDEIVGELQVLALRHMSISSLPGSVERLSNLRTLSLCHCELNKDVSTIGNIEKLEILSFVGSDISELPREIGKLSWLRLLDLTGCRKLLKIAPGVLSKLDRLEELYMRGTPIRWDYHTSFVELKQLSNRLVAIDIDIPYKFLSLGLNLENLEKFRISVGIEAVATEYIEEIHLKKQSSQNALFLEADEIAPLKCLLKALCRKTEILDVQVKDLKNLCNESINIHSSPLVPTPPFGNLRTLELIHCSKLRSIFSLSIARGLINLETLEILDCSRIVEIFSKERGDDDQDGKEAVEFLKLKKIKLFNLPNLVSFCKAAVDEVKFPQLKDLELVKLPKLTSIYAFSSTNHPFFHQKVTLSNLKVLQVSVIDNMTTVFPENVIPQLQSLESVRVEFSSSVEVVFDLQGSNLNEGHHQVFSQFQGISLKSLPRLTSVWKLCPRVVPDFQNLKSLFVRQCDSLRQLFTPSMAKTLVRLEDLIVNHCEILEAIVAAEKGEEDEKEFTTEEAILFPKLTVLDITMVPNLLMILPEPYSFNWSSLKRVQLKDKCHLLRRPDQVLV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.292
	SRR3591706	second leaf	0.214
	SRR3591707	mature leaf	0.149
	SRR3591708	Shoot apex	0.245
	SRR3591709	Stem	0.155
	SRR3591710	White floral bud	0.109
	SRR3591711	White flower	0.241
	SRR3591712	Green floral bud	0.239
	SRR3591713	Yellow flower	0.165
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.030
	SRR8316894	Third green stage	0.011
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.005
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.382
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.012
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.006
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.002
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000