Detail information of GWHGAAZE020690


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP21905.19.4599E-30hypothetical protein JCGZ_03043 [Jatropha curcas]
Swissprottr|Q9LHP2|SL30A_ARATH0.000000001Serine/arginine-rich SC35-like splicing factor SCL30A
trEMBLtr|A0A067JPG3|A0A067JPG3_JATCU4E-30Uncharacterized protein {ECO:0000313|EMBL:KDP21905.1}
TAIR10AT3G13570.10.00000005SC35-like splicing factor 30A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1793392717934260+
GWHAAZE00000006mRNA1793392717934260+
GWHAAZE00000006exon1793392717934024+
GWHAAZE00000006exon1793411917934260+
GWHAAZE00000006CDS1793392717934024+
GWHAAZE00000006CDS1793411917934260+
Transcript Sequence

Network for GWHGAAZE020690

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12900FUSIP1 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.443
SRR3591706second leaf0.000
SRR3591707mature leaf0.381
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.081
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.452
SRR8316896Juvenile bud stage 0.778
SRR8316897Juvenile bud stage 0.099
SRR8316894Third green stage 0.211
SRR8316900Third green stage 0.347
SRR8316901Third green stage 0.525
SRR8316898Complete white stage 0.139
SRR8316899Complete white stage 0.040
SRR8316903Complete white stage 0.595
SRR8316902Silver flowering stage0.265
SRR8316904Silver flowering stage0.134
SRR8316905Silver flowering stage0.042
SRR8316906Gold flowering stage 0.185
SRR8316907Gold flowering stage 0.014
SRR8316908Gold flowering stage 0.001
SRP132670SRR6706286Control0.018
SRR6706287Light intensity 50%0.019
SRR6706288Light intensity 20%0.032
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.119
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.427
CNS0095595Whole white alabastrum(diploid) 20.108
CNS0095596Whole white alabastrum(diploid) 30.009
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.134
CNS0095599Silvery flower (diploied) 20.266
CNS0095600Silvery flower (diploied) 30.009
CNS0095601Golden flower (diploid) 10.135
CNS0095602Golden flower (diploid) 20.098
CNS0095603Golden flower (diploid) 30.166
CNS0095604Slightly white alabastrum(tetraploid) 11.680
CNS0095605Slightly white alabastrum(tetraploid) 21.827
CNS0095606Slightly white alabastrum(tetraploid) 31.590
CNS0095607Whole white alabastrum(tetraploid) 11.430
CNS0095608Whole white alabastrum(tetraploid) 21.128
CNS0095609Whole white alabastrum(tetraploid) 31.674
CNS0095610Silvery flower (tetraploid) 12.882
CNS0095611Silvery flower (tetraploid) 21.582
CNS0095612Silvery flower (tetraploid) 30.089
CNS0095613Golden flower (tetraploid) 13.752
CNS0095614Golden flower (tetraploid) 23.342
CNS0095615Golden flower (tetraploid) 30.402
CRA001975CRR073297Stem 10.203
CRR073298Stem 20.134
CRR073299Stem 30.175
CRR073300Leaf 10.559
CRR073301Leaf 20.381
CRR073302Leaf 30.265
CRR073303Juvenile bud 10.013
CRR073304Juvenile bud 21.359
CRR073305Juvenile bud 30.000
CRR073306Third green 10.291
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.271
CRR073310Second white 20.000
CRR073311Second white 30.461
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.008
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.164
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000