Detail information of GWHGAAZE020725


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006373524.10hypothetical protein POPTR_0017s14510g [Populus trichocarpa]
COGYP_007146928.10.0000004NB-ARC domain-containing protein
Swissprottr|Q39214|RPM1_ARATH7E-48Disease resistance protein RPM1
trEMBLtr|B9N1W0|B9N1W0_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP51321.1}
TAIR10AT3G07040.16E-36NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1928240519284604-
GWHAAZE00000006mRNA1928240519284604-
GWHAAZE00000006exon1928240519282657-
GWHAAZE00000006exon1928276219282823-
GWHAAZE00000006exon1928291319283344-
GWHAAZE00000006exon1928348919284604-
GWHAAZE00000006CDS1928348919284604-
GWHAAZE00000006CDS1928291319283344-
GWHAAZE00000006CDS1928276219282823-
GWHAAZE00000006CDS1928240519282657-
Transcript Sequence

Network for GWHGAAZE020725

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC52302.20E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13457RPM1, RPS3 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE020725.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 300.10.20.30.40.50.60.70.80.911.11.21.31.41.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.250
SRR3591706second leaf0.137
SRR3591707mature leaf0.098
SRR3591708Shoot apex0.264
SRR3591709Stem0.131
SRR3591710White floral bud0.843
SRR3591711White flower0.857
SRR3591712Green floral bud0.898
SRR3591713Yellow flower0.577
SRP173429 SRR8316895Juvenile bud stage 0.161
SRR8316896Juvenile bud stage 0.265
SRR8316897Juvenile bud stage 0.329
SRR8316894Third green stage 0.179
SRR8316900Third green stage 0.430
SRR8316901Third green stage 0.581
SRR8316898Complete white stage 0.191
SRR8316899Complete white stage 0.158
SRR8316903Complete white stage 0.259
SRR8316902Silver flowering stage0.119
SRR8316904Silver flowering stage0.192
SRR8316905Silver flowering stage0.122
SRR8316906Gold flowering stage 0.273
SRR8316907Gold flowering stage 0.226
SRR8316908Gold flowering stage 0.283
SRP132670SRR6706286Control0.142
SRR6706287Light intensity 50%0.165
SRR6706288Light intensity 20%0.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.342
CNS0095593Slightly white alabastrum(diploid) 20.341
CNS0095594Slightly white alabastrum(diploid) 30.198
CNS0095595Whole white alabastrum(diploid) 20.327
CNS0095596Whole white alabastrum(diploid) 30.242
CNS0095597Whole white alabastrum(diploid) 40.319
CNS0095598Silvery flower (diploied) 10.186
CNS0095599Silvery flower (diploied) 20.108
CNS0095600Silvery flower (diploied) 30.310
CNS0095601Golden flower (diploid) 10.160
CNS0095602Golden flower (diploid) 20.190
CNS0095603Golden flower (diploid) 30.236
CNS0095604Slightly white alabastrum(tetraploid) 10.830
CNS0095605Slightly white alabastrum(tetraploid) 20.709
CNS0095606Slightly white alabastrum(tetraploid) 31.378
CNS0095607Whole white alabastrum(tetraploid) 10.516
CNS0095608Whole white alabastrum(tetraploid) 20.189
CNS0095609Whole white alabastrum(tetraploid) 30.756
CNS0095610Silvery flower (tetraploid) 11.188
CNS0095611Silvery flower (tetraploid) 20.571
CNS0095612Silvery flower (tetraploid) 30.795
CNS0095613Golden flower (tetraploid) 10.489
CNS0095614Golden flower (tetraploid) 20.562
CNS0095615Golden flower (tetraploid) 30.449
CRA001975CRR073297Stem 10.143
CRR073298Stem 20.253
CRR073299Stem 30.166
CRR073300Leaf 10.393
CRR073301Leaf 20.154
CRR073302Leaf 30.449
CRR073303Juvenile bud 10.479
CRR073304Juvenile bud 20.094
CRR073305Juvenile bud 30.138
CRR073306Third green 10.035
CRR073307Third green 20.160
CRR073308Third green 30.089
CRR073309Second white 10.152
CRR073310Second white 20.024
CRR073311Second white 30.050
CRR073312Silver flowering 10.088
CRR073313Silver flowering 20.055
CRR073314Silver flowering 30.140
CRR073315Gold flowering 10.022
CRR073316Gold flowering 20.015
CRR073317Gold flowering 30.037
CRR073318Tawny withering 10.139
CRR073319Tawny withering 20.035
CRR073320Tawny withering 30.264