Gene detail

Detail information of GWHGAAZE020750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655703.1	0	PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Vitis vinifera]
Swissprot	tr\|Q84VG6\|PP160_ARATH	0	Pentatricopeptide repeat-containing protein At2g17525, mitochondrial (Precursor)
trEMBL	tr\|B9S6W0\|B9S6W0_RICCO	0	Pentatricopeptide repeat-containing protein, putative {ECO:0000313\|EMBL:EEF40716.1}
TAIR10	AT2G17525.1	3E-180	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	19941720	19943207	-
GWHAAZE00000006	mRNA	19941720	19943207	-
GWHAAZE00000006	exon	19941720	19943207	-
GWHAAZE00000006	CDS	19941720	19943207	-

Transcript Sequence
>GWHTAAZE020774 ATGCCTGGCTCAATTGGTTCTCCCCCGGATGAGGACATTTTCATCACCATTGTCCGTGGTCTTGGACGAGCTCGAATGGTTCGACAAGTTGTTAAGGTTCTCGATTTGGTTGCCAAGTTTGGAAAGAACCCAAGTTTGAAACTCTTGAATTCGATACTCGATGTTCTTGTTAAGGAAGATATTGACATAGCTAGGGAGTTTTATAGGAAAAAGATGATGGGGTGTGGTGTTCAAGGTGATTGTTACACCTTTGGGATTTTGATGAAGGGGCTTTGTTTAACTAATAGGATCGGGGATGGTTTTAGGCTTTTGCAAGTGATGAAGAATCGAGGTGTGACGCCCAATGCGGTTATTTACAACACATTGATTCATGCTCTTTGCAAGAATGGGAAAGTTGGGAGAGCTAGGAGCTTGATGAATGAGATGGTGCAGCCCAATGAAGTGACCTTTAATGTTATGGTATCCGCTTATTGTCGAGAAGAGAATTTGGTGCTAGCTCTTGTGATGTTAGAGAAGAGCTTCAATCTTGGGTTTGTGCCTGATGTTGTTACATTGACTAAGGTGGTGGAGATCCTTTGTAAGGAAGGCCGAGCTATGGAAGCTGTTGAGATTTTAGCAAGGGTGGAGAGCAAGGGAGGTAGAATTGATGTTGTGGCTTATAACACCCTAATCATGGGATTTTGCAAATTGGGAAAAACCAAAGTTGGGTGCCGGTTTTTGAAGGAGATGGAGATTAAAGGGTGCATTCCCAACGTAGACACGTATAATGCATTGATCTCTGGTTTCTGTGCATCAGGTTCACTAGATTCAGCTCTTGACATGTTCAATGAAATGAAAACGGCCGGGATCATTTGGAATTTCGCTACGTATGACACGGTAATCCGTGGTTTTTGTTCAAGTGGAAGGATGGAAGATGGGTTTAAGATTTTGGAACTAATGGAGGAGAGTAAGGGCAGTTTTGGGGGTCGTATTACTCCTTACAACAGCATTCTATATGGTCTCTATAAGGACAACCGATGGGATGAAGCCCTTCAATATTTGACCAAAATGGGAAACTTATTTCCTAAAGCTGTTGATAGAAGCTTGAGGATAATACATTTATGTAAAGAGGATAGTATTGAGGAAGCCAAGAGGGTTTATGATCAAATGAAAGTAGAAGGGCTTGTACCATGCGCTCTTGTATATGTAAGTTTGATCAATGGGTATTGCCAAGCAGATTGTGTTCGAGAAGCATTTGAGCTGATGAACGAGATGGTTGTGCAGGGCTATTTTCCTGTTGCGTCAACGTTTAATCCTCTAATTGATGCATTTTGCGGGCAGGGCAAAGTTGTGGGTGCATCGAAACTTTTGGAGGACATGGTTGGAAGAGGTTGCTTGCCTAATTTAGGAAGCTATAGTCCTTTGGTTGATGCCTTTTGTGCTAAAGGGGGATTTCCACAAGGCTTTCATGTTCTTTTTACAAATGGTGGAAAAGGGTATTGTTCCTGA

Network for GWHGAAZE020750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0245

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.21	PPR	82	112	0.058
PF13041.7	PPR_2	114	159	1.40E-13
PF12854.8	PPR_1	212	244	3.20E-08
PF13041.7	PPR_2	250	299	4.00E-15
PF01535.21	PPR	327	350	0.038
PF01535.21	PPR	367	388	0.076
PF01535.21	PPR	394	422	7.00E-07
PF13041.7	PPR_2	428	473	3.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.038
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.037
	SRR3591708	Shoot apex	0.118
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.145
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.660
	SRR8316896	Juvenile bud stage	7.344
	SRR8316897	Juvenile bud stage	1.636
	SRR8316894	Third green stage	4.182
	SRR8316900	Third green stage	5.557
	SRR8316901	Third green stage	7.536
	SRR8316898	Complete white stage	1.329
	SRR8316899	Complete white stage	7.029
	SRR8316903	Complete white stage	4.215
	SRR8316902	Silver flowering stage	2.982
	SRR8316904	Silver flowering stage	4.412
	SRR8316905	Silver flowering stage	2.465
	SRR8316906	Gold flowering stage	6.242
	SRR8316907	Gold flowering stage	4.295
	SRR8316908	Gold flowering stage	3.647
SRP132670	SRR6706286	Control	6.850
	SRR6706287	Light intensity 50%	8.678
	SRR6706288	Light intensity 20%	8.800
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.458
	CNS0095593	Slightly white alabastrum(diploid) 2	1.661
	CNS0095594	Slightly white alabastrum(diploid) 3	1.295
	CNS0095595	Whole white alabastrum(diploid) 2	1.132
	CNS0095596	Whole white alabastrum(diploid) 3	1.606
	CNS0095597	Whole white alabastrum(diploid) 4	1.344
	CNS0095598	Silvery flower (diploied) 1	3.329
	CNS0095599	Silvery flower (diploied) 2	2.085
	CNS0095600	Silvery flower (diploied) 3	4.923
	CNS0095601	Golden flower (diploid) 1	1.995
	CNS0095602	Golden flower (diploid) 2	2.574
	CNS0095603	Golden flower (diploid) 3	3.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.277
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.464
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.635
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.414
	CNS0095610	Silvery flower (tetraploid) 1	5.363
	CNS0095611	Silvery flower (tetraploid) 2	5.039
	CNS0095612	Silvery flower (tetraploid) 3	3.192
	CNS0095613	Golden flower (tetraploid) 1	2.440
	CNS0095614	Golden flower (tetraploid) 2	3.876
	CNS0095615	Golden flower (tetraploid) 3	1.586
CRA001975	CRR073297	Stem 1	10.324
	CRR073298	Stem 2	8.849
	CRR073299	Stem 3	1.284
	CRR073300	Leaf 1	8.782
	CRR073301	Leaf 2	7.411
	CRR073302	Leaf 3	0.831
	CRR073303	Juvenile bud 1	0.666
	CRR073304	Juvenile bud 2	0.225
	CRR073305	Juvenile bud 3	1.230
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.120
	CRR073308	Third green 3	0.145
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.131
	CRR073312	Silver flowering 1	0.048
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.007
	CRR073315	Gold flowering 1	0.587
	CRR073316	Gold flowering 2	0.711
	CRR073317	Gold flowering 3	0.022
	CRR073318	Tawny withering 1	1.473
	CRR073319	Tawny withering 2	0.846
	CRR073320	Tawny withering 3	0.546