Gene detail

Detail information of GWHGAAZE020776

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009401140.1	2.4317E-139	PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
COG	NP_811992.1	1E-85	cysteine synthase A
Swissprot	tr\|O81155\|CYSKP_SOLTU	2E-128	Cysteine synthase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|M0SZ91\|M0SZ91_MUSAM	9E-140	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT2G43750.2	1E-95	O-acetylserine (thiol) lyase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	20620321	20628173	+
GWHAAZE00000006	mRNA	20620321	20628173	+
GWHAAZE00000006	exon	20620321	20620560	+
GWHAAZE00000006	exon	20622995	20623104	+
GWHAAZE00000006	exon	20623671	20623728	+
GWHAAZE00000006	exon	20624397	20624450	+
GWHAAZE00000006	exon	20625247	20625512	+
GWHAAZE00000006	exon	20626310	20626380	+
GWHAAZE00000006	exon	20626932	20627101	+
GWHAAZE00000006	exon	20627908	20627959	+
GWHAAZE00000006	exon	20628064	20628173	+
GWHAAZE00000006	CDS	20620321	20620560	+
GWHAAZE00000006	CDS	20622995	20623104	+
GWHAAZE00000006	CDS	20623671	20623728	+
GWHAAZE00000006	CDS	20624397	20624450	+
GWHAAZE00000006	CDS	20625247	20625512	+
GWHAAZE00000006	CDS	20626310	20626380	+
GWHAAZE00000006	CDS	20626932	20627101	+
GWHAAZE00000006	CDS	20627908	20627959	+
GWHAAZE00000006	CDS	20628064	20628173	+

Transcript Sequence
>GWHTAAZE020800 ATGGCGTCTTTGATGAGCAAAACGTTGCCGTCATCTCTATACAACTCCAACTCCAACTTCGAGCTTTCTCCTCCTCCACGAGCAGCTCACTCGTTGAAAACTTGCCGAATCGGCTTCCTTAGCAATACGAACCTGAAGAAATCTCAGATAACCTCTTCTCGTATCGCCTGTAAAGCTGTGTCTGTTCAACAGCCAGAAACTGAGATTGAAGGCCTAAACATTGCTGAAGATGTTACTCAGCTTATTGGGAATACACCGATGGTGTACCTAAATAACGTTGTAAAGGGCTCAGTTGCAAATATAGCTGCCAAGCTCGAGATCATGCAACCATGTTGCAGTGTCAAGGACAGAATAGGATTCAGTATGATAGCTGATGCTGAGCAGAAGGGACTCATCACTCCAGGGAAGATCAATATCTCCTTTGCAGATTACTTCTCTACATTGAGTAGTCAACATGCTAAGAGTATTTTGGTGGAGCCTACAAGTGGAAACACTGGCATCGGCCTTGCATTTATAGCCGCTTCAAAAGGATATAAGCTCATCTTGACAATGCCAGCATCAATGAGTCTAGAAAGAAGGGTTCTTTTGAAAGCATTTGGAGCTGAGCTTGTTTTAACTGATTCTGCTAAAGGCATGAAGGGGGCATGTCAGAAAGCAGAAGAAATATTGAATAGCACAATCGAATCGCATACATGCTTCAACAATTTGACAACCCTGCAAACCCTAAGTGCTTCATGCTTGAGGTCTACCCTCATGGGCATTTGTGTTGTCTCATTAGGAGCTTGTCTAAGAAGATTGGAAGATGTCATCGTTGGTTTCACATTTTTGCAGATACATTTCGAGACAACTGGGCCGGAGATCTGGGAAGATACGAGAGGCAAGGTGGACATTTTTATTGCTGGGATTGGAACTGGTGGAACTATATCAGGGGTTGGTCGGTTTCTTAAACAGCAAAATCCTAACATCAAGGTTATTCGCATAGAACCTGCAGAAAGCAGCGTACTTTCAGGTGGAAAGCCTGGCCCTCACAAAATTCAAGGAATTGGAGCAGGTTTTGTACCAGGGAACTTAGACCGAGATGTAATAGATGAAGTTATGCAGGTCCAAATCTTACTTTTCTGTCATATTTAA

Network for GWHGAAZE020776

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	78	365	4.90E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.808
	SRR3591706	second leaf	53.133
	SRR3591707	mature leaf	100.070
	SRR3591708	Shoot apex	44.024
	SRR3591709	Stem	26.362
	SRR3591710	White floral bud	33.575
	SRR3591711	White flower	43.866
	SRR3591712	Green floral bud	30.929
	SRR3591713	Yellow flower	45.742
SRP173429	SRR8316895	Juvenile bud stage	22.806
	SRR8316896	Juvenile bud stage	25.722
	SRR8316897	Juvenile bud stage	17.284
	SRR8316894	Third green stage	12.222
	SRR8316900	Third green stage	39.291
	SRR8316901	Third green stage	30.762
	SRR8316898	Complete white stage	16.950
	SRR8316899	Complete white stage	40.554
	SRR8316903	Complete white stage	20.295
	SRR8316902	Silver flowering stage	19.075
	SRR8316904	Silver flowering stage	25.082
	SRR8316905	Silver flowering stage	11.645
	SRR8316906	Gold flowering stage	52.558
	SRR8316907	Gold flowering stage	53.060
	SRR8316908	Gold flowering stage	46.326
SRP132670	SRR6706286	Control	38.413
	SRR6706287	Light intensity 50%	37.731
	SRR6706288	Light intensity 20%	43.652
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.105
	CNS0095593	Slightly white alabastrum(diploid) 2	18.593
	CNS0095594	Slightly white alabastrum(diploid) 3	16.639
	CNS0095595	Whole white alabastrum(diploid) 2	17.889
	CNS0095596	Whole white alabastrum(diploid) 3	19.044
	CNS0095597	Whole white alabastrum(diploid) 4	15.531
	CNS0095598	Silvery flower (diploied) 1	34.589
	CNS0095599	Silvery flower (diploied) 2	33.746
	CNS0095600	Silvery flower (diploied) 3	42.380
	CNS0095601	Golden flower (diploid) 1	31.137
	CNS0095602	Golden flower (diploid) 2	38.899
	CNS0095603	Golden flower (diploid) 3	34.892
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.802
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.513
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.281
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.666
	CNS0095610	Silvery flower (tetraploid) 1	41.065
	CNS0095611	Silvery flower (tetraploid) 2	35.994
	CNS0095612	Silvery flower (tetraploid) 3	32.142
	CNS0095613	Golden flower (tetraploid) 1	21.334
	CNS0095614	Golden flower (tetraploid) 2	33.836
	CNS0095615	Golden flower (tetraploid) 3	18.385
CRA001975	CRR073297	Stem 1	37.634
	CRR073298	Stem 2	32.849
	CRR073299	Stem 3	35.918
	CRR073300	Leaf 1	32.771
	CRR073301	Leaf 2	33.524
	CRR073302	Leaf 3	33.810
	CRR073303	Juvenile bud 1	39.126
	CRR073304	Juvenile bud 2	29.259
	CRR073305	Juvenile bud 3	28.686
	CRR073306	Third green 1	25.389
	CRR073307	Third green 2	17.549
	CRR073308	Third green 3	21.817
	CRR073309	Second white 1	33.082
	CRR073310	Second white 2	36.834
	CRR073311	Second white 3	29.163
	CRR073312	Silver flowering 1	28.797
	CRR073313	Silver flowering 2	24.234
	CRR073314	Silver flowering 3	25.485
	CRR073315	Gold flowering 1	143.783
	CRR073316	Gold flowering 2	187.898
	CRR073317	Gold flowering 3	118.591
	CRR073318	Tawny withering 1	30.189
	CRR073319	Tawny withering 2	28.205
	CRR073320	Tawny withering 3	23.434