Gene detail

Detail information of GWHGAAZE020809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP44234.1	0	hypothetical protein JCGZ_05701 [Jatropha curcas]
COG	YP_006369323.1	7E-26	Fatty acid desaturase
Swissprot	tr\|P22337\|STAD_RICCO	0	Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBL	tr\|A0A067LJ27\|A0A067LJ27_JATCU	0	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}
TAIR10	AT2G43710.1	6E-175	Plant stearoyl-acyl-carrier-protein desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	22174744	22178156	+
GWHAAZE00000006	mRNA	22174744	22178156	+
GWHAAZE00000006	exon	22174744	22174883	+
GWHAAZE00000006	exon	22175425	22175929	+
GWHAAZE00000006	exon	22177602	22178156	+
GWHAAZE00000006	CDS	22174744	22174883	+
GWHAAZE00000006	CDS	22175425	22175929	+
GWHAAZE00000006	CDS	22177602	22178156	+

Transcript Sequence
>GWHTAAZE020833 ATGACTCTGAAACTCAATACCCTCTCCTCCTTTCAATCACAGAAACAGCACTATTCTTCTTTCTCTTTTCCAAGAATGGCCAATCTTAGATCTCCCTCTCCCAAGTTTTTCATGGCTTCAACCTTTAGCTCTGGCTCCAGGGAAGTTGAAAATCTGAAGAAGCAGTTGAGCTCTCCAAGAGAGGTTCAAATGCAAGTGAGTCACTCAATGCCGCCCGAAAAGATCGAGATCTTCAAATCATTGGACGATTGGGCCGAGCAAAACGTACTGGTTCACCTAAAACCCGTAGAGAAATGCTGGCAACCACAGGATTTTCTTCCCAATCCAGCATCGGATGGTTTCGAAGAGCAAGTGAAGGAGCTAAGGGAGAGGACGAAGGAGGTTCCGGATGAGTACTTTGTTGTTTTGGTCGGAGATATGATCACTGAAGAAGCACTTCCAACTTACCAAACAACGATTAATAATCTTGATGGTGTTCGCGATGAAACGGGGAATAGCCCTTCTAGTTGGGCTGTTTGGACGAGGGCTTGGACAGCTGAAGAAAACAGGCACGGCGATCTTCTCAATAAGTATCTTTACCTTTCTGGACGAGTTGATATGAGGCAAATTGAGAAGACTATTCAGTATCTGATTGGATCAGGAATGAATCCACAGATGGAAAACAATCCCTACCTCGGATTCATCTACACCTCATTCCAAGAACGGGCAACTTTCATCACACACGGCAACACAGGCAGGCTAGCCAAAGAGCATGGAGACCTAAAACTAGCCCAAATATGCGGCATTATAGCCGCAGACGAGAAACGCCACGAAACTGCGTACACCAAAATAGTAGAAAAGCTATTCGAGATTGACCCAAATGATACAATCCTTGCTTTTGAAGACATGATGAGGAAAAGAATCGCAATGCCGGCCCACTTAATGTGTGATGGTCGTGATGACAACCTTTTCCAGCACTTCTCGGCTGTGGCTCAGCGACTCAGGGTCTACACTGCGAAGGACTATGCAGATATATTGGAGCATTTGATTAAAAGGTGGAACGTAGCGGATCTAACTGGCCTTTCGGGTAGAGGGCAAGAAGCTCAACACTATGTTTGCGAGTTACCTTCGAAAATTAGAAGGATCGAGGAGAGAACTCGAGGAAGGGCGAAAGAGGGACCTGCAGTTCCGTTTAGCTGGATATCTGATAGAAAAGTGTAA

Network for GWHGAAZE020809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03405.15	FA_desaturase_2	73	394	1.00E-154

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03921	FAB2, SSI2, desA1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006631	biological_process	fatty acid metabolic process
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0045300	molecular_function	acyl-[acyl-carrier-protein] desaturase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.463
	SRR3591706	second leaf	0.436
	SRR3591707	mature leaf	0.170
	SRR3591708	Shoot apex	0.764
	SRR3591709	Stem	5.324
	SRR3591710	White floral bud	0.294
	SRR3591711	White flower	0.138
	SRR3591712	Green floral bud	0.420
	SRR3591713	Yellow flower	0.357
SRP173429	SRR8316895	Juvenile bud stage	0.527
	SRR8316896	Juvenile bud stage	0.796
	SRR8316897	Juvenile bud stage	0.236
	SRR8316894	Third green stage	0.036
	SRR8316900	Third green stage	0.570
	SRR8316901	Third green stage	0.467
	SRR8316898	Complete white stage	0.094
	SRR8316899	Complete white stage	1.070
	SRR8316903	Complete white stage	0.276
	SRR8316902	Silver flowering stage	0.288
	SRR8316904	Silver flowering stage	0.425
	SRR8316905	Silver flowering stage	0.250
	SRR8316906	Gold flowering stage	0.837
	SRR8316907	Gold flowering stage	0.656
	SRR8316908	Gold flowering stage	0.355
SRP132670	SRR6706286	Control	0.639
	SRR6706287	Light intensity 50%	0.642
	SRR6706288	Light intensity 20%	0.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.136
	CNS0095593	Slightly white alabastrum(diploid) 2	0.376
	CNS0095594	Slightly white alabastrum(diploid) 3	0.097
	CNS0095595	Whole white alabastrum(diploid) 2	0.241
	CNS0095596	Whole white alabastrum(diploid) 3	0.905
	CNS0095597	Whole white alabastrum(diploid) 4	0.699
	CNS0095598	Silvery flower (diploied) 1	0.072
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.462
	CNS0095601	Golden flower (diploid) 1	0.087
	CNS0095602	Golden flower (diploid) 2	0.594
	CNS0095603	Golden flower (diploid) 3	0.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.818
	CRR073298	Stem 2	0.880
	CRR073299	Stem 3	0.594
	CRR073300	Leaf 1	0.329
	CRR073301	Leaf 2	0.319
	CRR073302	Leaf 3	0.411
	CRR073303	Juvenile bud 1	0.351
	CRR073304	Juvenile bud 2	0.251
	CRR073305	Juvenile bud 3	0.394
	CRR073306	Third green 1	0.279
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.212
	CRR073309	Second white 1	0.786
	CRR073310	Second white 2	0.116
	CRR073311	Second white 3	0.227
	CRR073312	Silver flowering 1	0.327
	CRR073313	Silver flowering 2	0.258
	CRR073314	Silver flowering 3	0.596
	CRR073315	Gold flowering 1	0.949
	CRR073316	Gold flowering 2	1.877
	CRR073317	Gold flowering 3	0.886
	CRR073318	Tawny withering 1	4.400
	CRR073319	Tawny withering 2	1.667
	CRR073320	Tawny withering 3	3.987