Gene detail

Detail information of GWHGAAZE020838

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11024.1	5.5296E-155	unnamed protein product [Coffea canephora]
COG	YP_007113629.1	1E-33	WD40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	1E-28	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A068URY2\|A0A068URY2_COFCA	2E-155	Coffea canephora DH200=94 genomic scaffold, scaffold_50 {ECO:0000313\|EMBL:CDP11024.1}
TAIR10	AT2G43770.1	2E-113	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	22945925	22947352	-
GWHAAZE00000006	mRNA	22945925	22947352	-
GWHAAZE00000006	exon	22947350	22947352	-
GWHAAZE00000006	exon	22946723	22946891	-
GWHAAZE00000006	exon	22945925	22946595	-
GWHAAZE00000006	CDS	22947350	22947352	-
GWHAAZE00000006	CDS	22946723	22946891	-
GWHAAZE00000006	CDS	22945925	22946595	-

Transcript Sequence
>GWHTAAZE020862 ATGAAGCTAGTCCCCTGTCTCCCAACAGAGGCCATGATGCAGAGTGAAAGTGCCCTGTCTGTGACAGGTCCCAGACCGATGGACTTGTCTGTTCCACATAGCTCCTCAAGGTCCCGGCCAAGCGGAAAGCAGAGAACTTCAAGTTTGGAGTCACCAATCATGTTACTAACAGGCCACAAGAATGCAATTCTCGATCTCCAATGGACCACTGATGGGACCCAGATAATATCTGCGAGCCCTGACAAGACCTTGAGGGTATGGGACGTCGAAGTAGGTAAACAAATCAAAAAAATGGCTGAACACTCCTCTTTTGTCAACTCTTGCTGCCCTTCCCGGCGGGGCCCTCCCCTTGTTGTAAGTGGGTCTGATGACGGCACCGCCAAGCTTTGGGATCTGCGCCAGCGTGGTGCGATCCAGACCTTCCCTGACAAGTACCAAATTACGGCCGTTGGATTCTCCGACGCATCGGATAAAATTTACACGGGTGGGATTGATAACGAGATCAAGGTGTGGGACCTACGTAGGAACGAGGTCACAATGACCCTTCAAGGGCATCAAGATATGATAACGGGGATGCAGTTGAGCCCAGACGGGTCGTATCTTTTGACCAATGGCATGGATTGTACCCTTCGGATTTGGGACATGCGCCCTTATGCCCCGCAAAACCGATGCGTGAAAATTCTCGAGGGACACCAGCATAACTTTGAGAAGAATTTGTTGAAATGTAGCTGGTCTGCTGATGGAAGTAAGGTTACTGCCGGTAGCTCCGATCGGATGGTGTATATTTGGGATACGGCGTCTGGCGTATACTGTATAAACTCCGGGGCACACTGGATCGGTTAA

Network for GWHGAAZE020838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0109

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	52	88	1.10E-05
PF00400.33	WD40	93	131	0.00024
PF00400.33	WD40	147	172	0.13
PF00400.33	WD40	179	214	2.90E-07
PF00400.33	WD40	223	264	1.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12857	SNRNP40, PRP8BP	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.421
	SRR3591706	second leaf	11.314
	SRR3591707	mature leaf	10.447
	SRR3591708	Shoot apex	15.822
	SRR3591709	Stem	12.273
	SRR3591710	White floral bud	10.252
	SRR3591711	White flower	13.922
	SRR3591712	Green floral bud	9.581
	SRR3591713	Yellow flower	12.572
SRP173429	SRR8316895	Juvenile bud stage	6.283
	SRR8316896	Juvenile bud stage	8.316
	SRR8316897	Juvenile bud stage	10.922
	SRR8316894	Third green stage	2.762
	SRR8316900	Third green stage	9.127
	SRR8316901	Third green stage	9.488
	SRR8316898	Complete white stage	3.917
	SRR8316899	Complete white stage	11.447
	SRR8316903	Complete white stage	6.419
	SRR8316902	Silver flowering stage	4.772
	SRR8316904	Silver flowering stage	4.120
	SRR8316905	Silver flowering stage	2.291
	SRR8316906	Gold flowering stage	9.367
	SRR8316907	Gold flowering stage	10.000
	SRR8316908	Gold flowering stage	19.775
SRP132670	SRR6706286	Control	9.259
	SRR6706287	Light intensity 50%	9.479
	SRR6706288	Light intensity 20%	9.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.080
	CNS0095593	Slightly white alabastrum(diploid) 2	5.528
	CNS0095594	Slightly white alabastrum(diploid) 3	4.263
	CNS0095595	Whole white alabastrum(diploid) 2	4.932
	CNS0095596	Whole white alabastrum(diploid) 3	5.559
	CNS0095597	Whole white alabastrum(diploid) 4	3.939
	CNS0095598	Silvery flower (diploied) 1	6.174
	CNS0095599	Silvery flower (diploied) 2	6.904
	CNS0095600	Silvery flower (diploied) 3	9.778
	CNS0095601	Golden flower (diploid) 1	6.880
	CNS0095602	Golden flower (diploid) 2	10.062
	CNS0095603	Golden flower (diploid) 3	10.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.402
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.474
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.962
	CNS0095610	Silvery flower (tetraploid) 1	33.959
	CNS0095611	Silvery flower (tetraploid) 2	31.846
	CNS0095612	Silvery flower (tetraploid) 3	30.036
	CNS0095613	Golden flower (tetraploid) 1	29.908
	CNS0095614	Golden flower (tetraploid) 2	35.199
	CNS0095615	Golden flower (tetraploid) 3	36.598
CRA001975	CRR073297	Stem 1	9.187
	CRR073298	Stem 2	10.934
	CRR073299	Stem 3	16.738
	CRR073300	Leaf 1	11.952
	CRR073301	Leaf 2	12.454
	CRR073302	Leaf 3	11.575
	CRR073303	Juvenile bud 1	13.804
	CRR073304	Juvenile bud 2	9.635
	CRR073305	Juvenile bud 3	16.579
	CRR073306	Third green 1	10.289
	CRR073307	Third green 2	8.656
	CRR073308	Third green 3	10.859
	CRR073309	Second white 1	19.569
	CRR073310	Second white 2	15.342
	CRR073311	Second white 3	14.573
	CRR073312	Silver flowering 1	18.386
	CRR073313	Silver flowering 2	16.963
	CRR073314	Silver flowering 3	16.835
	CRR073315	Gold flowering 1	9.703
	CRR073316	Gold flowering 2	10.752
	CRR073317	Gold flowering 3	10.439
	CRR073318	Tawny withering 1	12.551
	CRR073319	Tawny withering 2	11.286
	CRR073320	Tawny withering 3	13.071