Detail information of GWHGAAZE020844


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001239810.16.68345E-64uncharacterized protein LOC100789793 [Glycine max]
COGYP_001518904.11E-11WD repeat-containing protein
Swissprottr|Q9FLX9|NLE1_ARATH3E-10Notchless protein homolog
trEMBLtr|C6TJP9|C6TJP9_SOYBN2E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G04160.1}
TAIR10AT2G43770.13E-50Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2315906023163051+
GWHAAZE00000006mRNA2315906023163051+
GWHAAZE00000006exon2316268023163051+
GWHAAZE00000006exon2315906023159197+
GWHAAZE00000006five_prime_UTR2315906023159197+
GWHAAZE00000006five_prime_UTR2316268023162709+
GWHAAZE00000006CDS2316271023163051+
Transcript Sequence

Network for GWHGAAZE020844

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4042783.40E-07
PF00400.33WD40841120.098
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12857SNRNP40, PRP8BP Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.959
SRR3591706second leaf13.393
SRR3591707mature leaf10.961
SRR3591708Shoot apex12.491
SRR3591709Stem12.466
SRR3591710White floral bud14.593
SRR3591711White flower20.154
SRR3591712Green floral bud13.880
SRR3591713Yellow flower17.947
SRP173429 SRR8316895Juvenile bud stage 13.988
SRR8316896Juvenile bud stage 16.076
SRR8316897Juvenile bud stage 1.681
SRR8316894Third green stage 5.183
SRR8316900Third green stage 16.345
SRR8316901Third green stage 12.462
SRR8316898Complete white stage 5.827
SRR8316899Complete white stage 18.723
SRR8316903Complete white stage 14.432
SRR8316902Silver flowering stage6.011
SRR8316904Silver flowering stage9.154
SRR8316905Silver flowering stage3.855
SRR8316906Gold flowering stage 15.789
SRR8316907Gold flowering stage 21.662
SRR8316908Gold flowering stage 14.439
SRP132670SRR6706286Control27.083
SRR6706287Light intensity 50%22.448
SRR6706288Light intensity 20%25.929
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.569
CNS0095593Slightly white alabastrum(diploid) 29.982
CNS0095594Slightly white alabastrum(diploid) 36.046
CNS0095595Whole white alabastrum(diploid) 26.417
CNS0095596Whole white alabastrum(diploid) 35.309
CNS0095597Whole white alabastrum(diploid) 45.824
CNS0095598Silvery flower (diploied) 15.449
CNS0095599Silvery flower (diploied) 212.990
CNS0095600Silvery flower (diploied) 312.117
CNS0095601Golden flower (diploid) 15.833
CNS0095602Golden flower (diploid) 215.920
CNS0095603Golden flower (diploid) 314.984
CNS0095604Slightly white alabastrum(tetraploid) 113.959
CNS0095605Slightly white alabastrum(tetraploid) 210.334
CNS0095606Slightly white alabastrum(tetraploid) 326.201
CNS0095607Whole white alabastrum(tetraploid) 18.588
CNS0095608Whole white alabastrum(tetraploid) 26.433
CNS0095609Whole white alabastrum(tetraploid) 316.182
CNS0095610Silvery flower (tetraploid) 122.981
CNS0095611Silvery flower (tetraploid) 222.811
CNS0095612Silvery flower (tetraploid) 316.342
CNS0095613Golden flower (tetraploid) 114.688
CNS0095614Golden flower (tetraploid) 225.604
CNS0095615Golden flower (tetraploid) 323.716
CRA001975CRR073297Stem 125.895
CRR073298Stem 220.018
CRR073299Stem 328.380
CRR073300Leaf 119.641
CRR073301Leaf 218.913
CRR073302Leaf 323.410
CRR073303Juvenile bud 121.911
CRR073304Juvenile bud 224.587
CRR073305Juvenile bud 327.096
CRR073306Third green 117.752
CRR073307Third green 215.865
CRR073308Third green 315.753
CRR073309Second white 135.979
CRR073310Second white 227.815
CRR073311Second white 324.445
CRR073312Silver flowering 130.846
CRR073313Silver flowering 231.132
CRR073314Silver flowering 320.385
CRR073315Gold flowering 115.339
CRR073316Gold flowering 221.682
CRR073317Gold flowering 325.090
CRR073318Tawny withering 118.528
CRR073319Tawny withering 214.668
CRR073320Tawny withering 312.954