Gene detail

Detail information of GWHGAAZE020855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076710.1	5.17449E-75	PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9FM87\|FBD26_ARATH	7E-16	Putative FBD-associated F-box protein At5g56440
trEMBL	tr\|A0A068UHD6\|A0A068UHD6_COFCA	1E-66	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07614.1}
TAIR10	AT3G18150.1	2E-14	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	23343589	23345077	-
GWHAAZE00000006	mRNA	23343589	23345077	-
GWHAAZE00000006	exon	23343589	23343909	-
GWHAAZE00000006	exon	23344000	23344713	-
GWHAAZE00000006	exon	23344787	23345077	-
GWHAAZE00000006	CDS	23344787	23345077	-
GWHAAZE00000006	CDS	23344000	23344713	-
GWHAAZE00000006	CDS	23343589	23343909	-

Transcript Sequence
>GWHTAAZE020879 ATGCAGCATGTTGAAGGTGGCTATTACTTGGATCAGGATCCAACAATTCAGTTGCCCGATGAAATTCTTGCGTATATACTCTCATTTTTAACATTGAAGGAAGCGATTGCTACTAGTGTCCTTTCAAAACGATGGAAGGGTCTGTGGGCCTTTGTGACGCGTCTCCACTTTGACCATAAGATATCATGGCTGGATGATGATCTTATCATCATGAAGGAGAAGAGTGCAAGCAAAAGGCAGATTGTGGCAAAGAAGCTTGAGGCAGAGAACACAGATAGGTTTGTCAGACAGAATTACAAAATCAATATCGATGAGTGGCTTAAATTTGCATTGACGAGGAGGGTTCAGCGGCTTGAGTTGTACATGGCCTGGCATCATATTGGTCCCCTTCCCCGCTCTCGAAGACCTTATAATTTAGTGTTGCCTTCAGAAACTGTCAGCGTTAGTGACTTTAAGTCCCTTAAATCGCTGCATTTGAAAGCTGTTGACGTGAGTGGACAAGTACTTGAGAACATATTGGCCAACTGTCCTGTTCTTGAACGGTTTGCTGTCCATGGGTCTCTAGAACTGAAAACTTTCAAACTAGCTAGCCCATCCCTCGTGTTAAAGTATTTGGAGATAAGTTGGTGTCCCAACTTAAATTCTATCGAGATCTGCAATTTAACAAATCTTGTTCGTTTTGGATACCGGGGACCTGATATGAATTTGCGTCTCAACAATGTTCTGCGGCTTGTGGAGTTGTCTATTTCTGGTCGGCAAATACAGCAGTCGATGCCGGATTTTCTACCTAAATTTTCAAGCTGCTTTTCTCAGCTGGAAACTCTTGAATTGGATGTGAATCAAGTTGTGGCATTTGGGGGATTTCGTCATGTGCAGCCTCCTGAATTCCCCAATCTCAGGAAATTAGTATTGAAGAGCAAATCAATAGGGGGTTGTGATAAATGCCTCCTGGGATATACTTCCTTGATAAAGGCATCTCCTTTGTTGCAAAAATTTGTTTTGGTGGAACATTGGTATCAACCAAGGATTGACCATGCCAGGAGAGTGAAGAAGGCGGGGAAATGGCCACATGAACGACTGGAGGAGGTGGAGTTGGCTGGTTATTATGGTTGCAAATCTCATCAAGAACTTGTCATTTACTTTCTGGAGAACGCAACAGCCCTCAAGAGAATCATTGTTCGCCCTTGTGACCAGAGTCATGATTACATGAAACTACAACTTCCAATTACTAGGGATGTGATAATGATGGAAAAAGCTGCACGACGGCGAGCCAAGGAGCAGCTTCCAGGAATAATACCTCCTAGTATGGAACTGATCATCCTTTGA

Network for GWHGAAZE020855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	17	48	4.10E-05
PF07723.14	LRR_2	153	177	0.0014
PF08387.11	FBD	359	391	9.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.965
	SRR3591706	second leaf	0.404
	SRR3591707	mature leaf	0.796
	SRR3591708	Shoot apex	1.074
	SRR3591709	Stem	1.026
	SRR3591710	White floral bud	0.267
	SRR3591711	White flower	0.626
	SRR3591712	Green floral bud	0.389
	SRR3591713	Yellow flower	0.089
SRP173429	SRR8316895	Juvenile bud stage	0.746
	SRR8316896	Juvenile bud stage	1.275
	SRR8316897	Juvenile bud stage	1.013
	SRR8316894	Third green stage	0.383
	SRR8316900	Third green stage	0.788
	SRR8316901	Third green stage	0.768
	SRR8316898	Complete white stage	0.756
	SRR8316899	Complete white stage	1.716
	SRR8316903	Complete white stage	0.855
	SRR8316902	Silver flowering stage	0.731
	SRR8316904	Silver flowering stage	1.222
	SRR8316905	Silver flowering stage	0.524
	SRR8316906	Gold flowering stage	2.012
	SRR8316907	Gold flowering stage	1.667
	SRR8316908	Gold flowering stage	2.177
SRP132670	SRR6706286	Control	0.791
	SRR6706287	Light intensity 50%	0.802
	SRR6706288	Light intensity 20%	1.250
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.711
	CNS0095593	Slightly white alabastrum(diploid) 2	0.876
	CNS0095594	Slightly white alabastrum(diploid) 3	0.890
	CNS0095595	Whole white alabastrum(diploid) 2	0.701
	CNS0095596	Whole white alabastrum(diploid) 3	0.356
	CNS0095597	Whole white alabastrum(diploid) 4	0.352
	CNS0095598	Silvery flower (diploied) 1	2.058
	CNS0095599	Silvery flower (diploied) 2	0.496
	CNS0095600	Silvery flower (diploied) 3	2.078
	CNS0095601	Golden flower (diploid) 1	0.751
	CNS0095602	Golden flower (diploid) 2	1.964
	CNS0095603	Golden flower (diploid) 3	2.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.700
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.432
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.716
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.225
	CNS0095610	Silvery flower (tetraploid) 1	0.244
	CNS0095611	Silvery flower (tetraploid) 2	0.068
	CNS0095612	Silvery flower (tetraploid) 3	0.091
	CNS0095613	Golden flower (tetraploid) 1	0.076
	CNS0095614	Golden flower (tetraploid) 2	0.176
	CNS0095615	Golden flower (tetraploid) 3	0.078
CRA001975	CRR073297	Stem 1	1.348
	CRR073298	Stem 2	1.153
	CRR073299	Stem 3	0.627
	CRR073300	Leaf 1	1.203
	CRR073301	Leaf 2	1.121
	CRR073302	Leaf 3	1.448
	CRR073303	Juvenile bud 1	1.183
	CRR073304	Juvenile bud 2	1.415
	CRR073305	Juvenile bud 3	2.605
	CRR073306	Third green 1	0.233
	CRR073307	Third green 2	0.374
	CRR073308	Third green 3	0.253
	CRR073309	Second white 1	0.564
	CRR073310	Second white 2	0.958
	CRR073311	Second white 3	0.859
	CRR073312	Silver flowering 1	0.712
	CRR073313	Silver flowering 2	0.301
	CRR073314	Silver flowering 3	0.555
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.169
	CRR073317	Gold flowering 3	0.118
	CRR073318	Tawny withering 1	1.662
	CRR073319	Tawny withering 2	0.497
	CRR073320	Tawny withering 3	0.951