Detail information of GWHGAAZE020905


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007033676.12.3267E-11Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
trEMBLtr|A0A061EJN2|A0A061EJN2_THECC9E-12Cc-nbs-lrr resistance protein, putative {ECO:0000313|EMBL:EOY04602.1}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2606168026062247+
GWHAAZE00000006mRNA2606168026062247+
GWHAAZE00000006exon2606168026061811+
GWHAAZE00000006exon2606184326062247+
GWHAAZE00000006CDS2606168026061811+
GWHAAZE00000006CDS2606184326062247+
Transcript Sequence

Network for GWHGAAZE020905

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0130


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18052.2Rx_N1251786.30E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.029
SRR8316896Juvenile bud stage 3.415
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.697
SRR8316900Third green stage 1.411
SRR8316901Third green stage 1.573
SRR8316898Complete white stage 0.554
SRR8316899Complete white stage 5.338
SRR8316903Complete white stage 2.335
SRR8316902Silver flowering stage2.600
SRR8316904Silver flowering stage5.960
SRR8316905Silver flowering stage2.101
SRR8316906Gold flowering stage 8.024
SRR8316907Gold flowering stage 3.925
SRR8316908Gold flowering stage 2.972
SRP132670SRR6706286Control1.456
SRR6706287Light intensity 50%1.059
SRR6706288Light intensity 20%1.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.704
CNS0095593Slightly white alabastrum(diploid) 20.619
CNS0095594Slightly white alabastrum(diploid) 31.381
CNS0095595Whole white alabastrum(diploid) 20.923
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.574
CNS0095598Silvery flower (diploied) 13.864
CNS0095599Silvery flower (diploied) 23.150
CNS0095600Silvery flower (diploied) 32.856
CNS0095601Golden flower (diploid) 11.948
CNS0095602Golden flower (diploid) 25.311
CNS0095603Golden flower (diploid) 34.485
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.093
CRR073298Stem 23.054
CRR073299Stem 30.312
CRR073300Leaf 12.049
CRR073301Leaf 21.211
CRR073302Leaf 30.303
CRR073303Juvenile bud 10.118
CRR073304Juvenile bud 20.506
CRR073305Juvenile bud 30.053
CRR073306Third green 10.000
CRR073307Third green 20.043
CRR073308Third green 30.313
CRR073309Second white 10.172
CRR073310Second white 20.214
CRR073311Second white 30.191
CRR073312Silver flowering 10.592
CRR073313Silver flowering 20.079
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.072
CRR073316Gold flowering 20.871
CRR073317Gold flowering 31.410
CRR073318Tawny withering 11.214
CRR073319Tawny withering 20.633
CRR073320Tawny withering 30.807