Gene detail

Detail information of GWHGAAZE020913

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010105881.1	6.5381E-149	hypothetical protein L484_021538 [Morus notabilis]
Swissprot	tr\|Q84WN0\|Y4920_ARATH	2E-72	Uncharacterized protein At4g37920, chloroplastic (Precursor)
trEMBL	tr\|W9RSH2\|W9RSH2_9ROSA	2E-149	Uncharacterized protein {ECO:0000313\|EMBL:EXC06700.1}
TAIR10	AT1G36320.1	2E-103	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	26400397	26404792	+
GWHAAZE00000006	mRNA	26400397	26404792	+
GWHAAZE00000006	exon	26400397	26400786	+
GWHAAZE00000006	exon	26401224	26401392	+
GWHAAZE00000006	exon	26403697	26403941	+
GWHAAZE00000006	exon	26404089	26404171	+
GWHAAZE00000006	exon	26404633	26404792	+
GWHAAZE00000006	CDS	26400397	26400786	+
GWHAAZE00000006	CDS	26401224	26401392	+
GWHAAZE00000006	CDS	26403697	26403941	+
GWHAAZE00000006	CDS	26404089	26404171	+
GWHAAZE00000006	CDS	26404633	26404792	+

Transcript Sequence
>GWHTAAZE020937 TCTCATTTGCCATTCAATGCAATAAGATTGCGAGGGACCTATACCGCAGCAGCTGTTGTTTCTGATAGAGGTGCGGTACCAAATGAGTCCGTGAAAGAAAATAGGCCGTTTGCCGAACAATCTGAACCTGCAGAAAATCAAGAAGCCCCTACAGAAGAAGAAAGTGAAGAAAAGGAAGACCATAAAATGGTTCGAGTTTGTGACAAACTAATTGGCATTTTCATGATTGACAAGCCCACTCCAACTGACTGGAGAAGATTATTAGCTTTCAGCAAGAGTTGGAACGATATCAGGCCCCACTTTTATAAAAGATGTCAGGACCGAGCAGATAGCGAGGATGATCCTGGGATGAAGCACAAGCTACTTCGGCTTCGAAGGAAGCTGAAAGAGATTGATGACGACGTGCAAAGACATAATGAACTCTTTGCGATGGTTAAAAGAGCACCCTCTGATATCAGAGAAATTGTGGCGAGACGTCGCAAGGATTTCACAAAAGAATTCTTTGACCATATTTTCACCGTAGCACAATCTTACCTTGACAATCCAGATGAAAAAGATGAAGTGGTGAAGATTGGGAAGATGTGCTTGGATGCCGTACAGGCATATGATATAGCATCTGACAGTGTTGAAAGAATGAATGCCGCACAGTTGAAATTAGACGATATTATGAATTCTCCTTCTTTAGATGCTGCTCACAGGAAGATAGATTTTCTGGCTAAGAATAATCAACTAGATTCAGCACTGGCACTAACTGCTACAAAAGCTTGGTCAGCGGGCAAGGAGTCAAGCATGATGAAAGATGAGGCAAAGGATATGTTATATCATCTCTACTTGAAAGCCAGGGGTAATCTTCAGAGGCAGTTGCCAAAAGAGATCAGGATAATCAAGACACCAGAGATCATGCACGATATGATACAGACAGTAGTGGTAGCATACCATTCCAGCAAAGAAGGTACTGTTTTAAGGCAAGCTAGGGATTTGTTGAATCCAAATATTGTGCGAGAACTGGAAGTAATACAGAAGTTAATCCGAGACAACTTCATGTAA

Network for GWHGAAZE020913

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0217

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.259
	SRR3591706	second leaf	53.288
	SRR3591707	mature leaf	79.653
	SRR3591708	Shoot apex	65.717
	SRR3591709	Stem	33.235
	SRR3591710	White floral bud	48.472
	SRR3591711	White flower	83.256
	SRR3591712	Green floral bud	61.655
	SRR3591713	Yellow flower	90.907
SRP173429	SRR8316895	Juvenile bud stage	40.173
	SRR8316896	Juvenile bud stage	52.084
	SRR8316897	Juvenile bud stage	24.223
	SRR8316894	Third green stage	23.444
	SRR8316900	Third green stage	76.079
	SRR8316901	Third green stage	67.902
	SRR8316898	Complete white stage	24.226
	SRR8316899	Complete white stage	79.268
	SRR8316903	Complete white stage	37.608
	SRR8316902	Silver flowering stage	20.535
	SRR8316904	Silver flowering stage	24.797
	SRR8316905	Silver flowering stage	14.618
	SRR8316906	Gold flowering stage	58.632
	SRR8316907	Gold flowering stage	50.023
	SRR8316908	Gold flowering stage	60.941
SRP132670	SRR6706286	Control	72.714
	SRR6706287	Light intensity 50%	69.130
	SRR6706288	Light intensity 20%	74.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.442
	CNS0095593	Slightly white alabastrum(diploid) 2	34.131
	CNS0095594	Slightly white alabastrum(diploid) 3	31.993
	CNS0095595	Whole white alabastrum(diploid) 2	37.311
	CNS0095596	Whole white alabastrum(diploid) 3	37.231
	CNS0095597	Whole white alabastrum(diploid) 4	38.868
	CNS0095598	Silvery flower (diploied) 1	64.376
	CNS0095599	Silvery flower (diploied) 2	51.538
	CNS0095600	Silvery flower (diploied) 3	70.988
	CNS0095601	Golden flower (diploid) 1	58.444
	CNS0095602	Golden flower (diploid) 2	78.936
	CNS0095603	Golden flower (diploid) 3	76.577
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.920
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.253
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.779
	CNS0095610	Silvery flower (tetraploid) 1	88.511
	CNS0095611	Silvery flower (tetraploid) 2	110.900
	CNS0095612	Silvery flower (tetraploid) 3	90.417
	CNS0095613	Golden flower (tetraploid) 1	81.614
	CNS0095614	Golden flower (tetraploid) 2	89.385
	CNS0095615	Golden flower (tetraploid) 3	72.174
CRA001975	CRR073297	Stem 1	54.242
	CRR073298	Stem 2	56.182
	CRR073299	Stem 3	47.439
	CRR073300	Leaf 1	54.896
	CRR073301	Leaf 2	42.331
	CRR073302	Leaf 3	49.282
	CRR073303	Juvenile bud 1	56.884
	CRR073304	Juvenile bud 2	46.293
	CRR073305	Juvenile bud 3	42.446
	CRR073306	Third green 1	12.486
	CRR073307	Third green 2	7.257
	CRR073308	Third green 3	10.199
	CRR073309	Second white 1	25.950
	CRR073310	Second white 2	27.252
	CRR073311	Second white 3	24.720
	CRR073312	Silver flowering 1	28.613
	CRR073313	Silver flowering 2	27.417
	CRR073314	Silver flowering 3	26.654
	CRR073315	Gold flowering 1	82.052
	CRR073316	Gold flowering 2	127.799
	CRR073317	Gold flowering 3	60.724
	CRR073318	Tawny withering 1	29.334
	CRR073319	Tawny withering 2	25.832
	CRR073320	Tawny withering 3	31.166