Gene detail

Detail information of GWHGAAZE020916

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ80962.1	0	mitogen-activated protein kinase 2 [Morus notabilis]
COG	YP_004483749.1	1E-22	serine/threonine protein kinase
Swissprot	tr\|Q40532\|NTF4_TOBAC	0	Mitogen-activated protein kinase homolog NTF4
trEMBL	tr\|W8EEW5\|W8EEW5_9ROSA	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT2G43790.1	1E-143	MAP kinase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	26493335	26501555	+
GWHAAZE00000006	mRNA	26493335	26501555	+
GWHAAZE00000006	exon	26493335	26493567	+
GWHAAZE00000006	exon	26494232	26494361	+
GWHAAZE00000006	exon	26496015	26496152	+
GWHAAZE00000006	exon	26501202	26501555	+
GWHAAZE00000006	CDS	26493335	26493567	+
GWHAAZE00000006	CDS	26494232	26494361	+
GWHAAZE00000006	CDS	26496015	26496152	+
GWHAAZE00000006	CDS	26501202	26501555	+

Transcript Sequence
>GWHTAAZE020940 ATGGACGCTCAGCATTCCGACACCGTAATGTCAGAGGCGGCTGCGCCACCTCCTCAATCCGATCCACCGCCTCAGCAGCCGCCGGTGGCTGCCGGGATCGAGAATATTCCGGCGACGATGAGCCACGGCGGCCGCTTCATACAATACAACATCTTCGGGAACATCTTCGAAGTCACCGCCAAGTATAAACCCCCAATCATGCCTATCGGCAAAGGCGCTTATGGAATAGTATGTTCGGCTTTAAATTCGGAAACGAATGAACACGTTGCAATAAAGAAGATTGCAAATGCTTTTGATAACAAAATTGATGCCAAGAGGACTCTGCGTGAGATCAAGCTTCTCCGTCACATGGATCATGAAAACGTTGTTGCAATTAGAGATATTATACCACCGCCACAGAGGGCGTTTTTTAATGATGTTTACATTGCCTATGAGCTTATGGACACTGATCTCCATCAAATTATTCGTTCTAATCAATCCTTATCAGAGGAGCATTGCCAGTATTTCTTGTATCAGATCCTCCGGGGGTTAAAATACATACATTCTGCAAATGTTCTTCACAGGGACTTGAAGCCAAGCAATCTCTTGCTCAATGCGAATTGCGATCTGAAAATATGTGATTTTGGATTAGCTCGAGTGACTTCCGAGACGGATTTTATGACAGAATATGTTGTTACAAGATGGTACAGGGCACCAGAGCTCTTGCTAAATTCTTCTGATTATACTGCTGCCATTGATGTTTGGTCAGTGGGTTGCATTTTCATGGAATTGATGGACCGAAAGCCTTTGTTTCCTGGTAGAGACCACGTTCATCAACTGCGATTGCTTATGGAGGTGATTTGTTTCTTTGTTTAA

Network for GWHGAAZE020916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	68	271	2.30E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K14512	MPK6	MAPK signaling pathway - plant	map04016
		Plant hormone signal transduction	map04075
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004707	molecular_function	MAP kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.988
	SRR3591706	second leaf	26.615
	SRR3591707	mature leaf	21.021
	SRR3591708	Shoot apex	31.638
	SRR3591709	Stem	45.442
	SRR3591710	White floral bud	35.947
	SRR3591711	White flower	37.498
	SRR3591712	Green floral bud	34.761
	SRR3591713	Yellow flower	36.837
SRP173429	SRR8316895	Juvenile bud stage	19.249
	SRR8316896	Juvenile bud stage	27.736
	SRR8316897	Juvenile bud stage	18.997
	SRR8316894	Third green stage	13.184
	SRR8316900	Third green stage	39.920
	SRR8316901	Third green stage	34.727
	SRR8316898	Complete white stage	23.236
	SRR8316899	Complete white stage	64.649
	SRR8316903	Complete white stage	29.092
	SRR8316902	Silver flowering stage	20.605
	SRR8316904	Silver flowering stage	26.944
	SRR8316905	Silver flowering stage	9.186
	SRR8316906	Gold flowering stage	40.348
	SRR8316907	Gold flowering stage	36.276
	SRR8316908	Gold flowering stage	38.965
SRP132670	SRR6706286	Control	45.420
	SRR6706287	Light intensity 50%	33.426
	SRR6706288	Light intensity 20%	44.110
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.506
	CNS0095593	Slightly white alabastrum(diploid) 2	20.191
	CNS0095594	Slightly white alabastrum(diploid) 3	16.977
	CNS0095595	Whole white alabastrum(diploid) 2	18.746
	CNS0095596	Whole white alabastrum(diploid) 3	22.806
	CNS0095597	Whole white alabastrum(diploid) 4	15.773
	CNS0095598	Silvery flower (diploied) 1	15.497
	CNS0095599	Silvery flower (diploied) 2	19.635
	CNS0095600	Silvery flower (diploied) 3	25.286
	CNS0095601	Golden flower (diploid) 1	21.018
	CNS0095602	Golden flower (diploid) 2	36.075
	CNS0095603	Golden flower (diploid) 3	41.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.835
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.604
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.787
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.559
	CNS0095610	Silvery flower (tetraploid) 1	28.311
	CNS0095611	Silvery flower (tetraploid) 2	33.815
	CNS0095612	Silvery flower (tetraploid) 3	44.851
	CNS0095613	Golden flower (tetraploid) 1	20.781
	CNS0095614	Golden flower (tetraploid) 2	29.430
	CNS0095615	Golden flower (tetraploid) 3	44.416
CRA001975	CRR073297	Stem 1	35.091
	CRR073298	Stem 2	24.888
	CRR073299	Stem 3	38.481
	CRR073300	Leaf 1	45.936
	CRR073301	Leaf 2	44.106
	CRR073302	Leaf 3	48.880
	CRR073303	Juvenile bud 1	59.715
	CRR073304	Juvenile bud 2	53.191
	CRR073305	Juvenile bud 3	57.543
	CRR073306	Third green 1	44.238
	CRR073307	Third green 2	47.199
	CRR073308	Third green 3	42.180
	CRR073309	Second white 1	49.987
	CRR073310	Second white 2	35.570
	CRR073311	Second white 3	35.364
	CRR073312	Silver flowering 1	46.302
	CRR073313	Silver flowering 2	43.849
	CRR073314	Silver flowering 3	32.527
	CRR073315	Gold flowering 1	24.940
	CRR073316	Gold flowering 2	27.169
	CRR073317	Gold flowering 3	28.230
	CRR073318	Tawny withering 1	41.039
	CRR073319	Tawny withering 2	28.781
	CRR073320	Tawny withering 3	33.134