Gene detail

Detail information of GWHGAAZE020933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08137.1	6.0266E-133	unnamed protein product [Coffea canephora]
COG	YP_001820212.1	7E-25	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|P48979\|PGLR_PRUPE	3E-125	Polygalacturonase (Precursor)
trEMBL	tr\|A0A068UIN7\|A0A068UIN7_COFCA	2E-133	Coffea canephora DH200=94 genomic scaffold, scaffold_30 {ECO:0000313\|EMBL:CDP08137.1}
TAIR10	AT3G59850.1	1E-94	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	27496601	27498172	+
GWHAAZE00000006	mRNA	27496601	27498172	+
GWHAAZE00000006	exon	27496601	27496803	+
GWHAAZE00000006	exon	27497002	27497034	+
GWHAAZE00000006	exon	27497388	27497618	+
GWHAAZE00000006	exon	27497719	27498172	+
GWHAAZE00000006	CDS	27496601	27496803	+
GWHAAZE00000006	CDS	27497002	27497034	+
GWHAAZE00000006	CDS	27497388	27497618	+
GWHAAZE00000006	CDS	27497719	27498172	+

Transcript Sequence
>GWHTAAZE020957 ATGATGAAGTCCATGAGTTTCCTTGCTCTTACAATAACTTCCATCTTCTTCAACAATTCGTTAGCAACCGCAGTTACATACAATGTGGTCGATTTAGGAGCCAAGCGAGACGGCAAGACAGACTCCACAAAATCATTCGTAACTGCGTGGGCCACAGCTTGTGGGTCAATGAAGCCAGCCATTATATACGTGCCTACTGGAAGGCCTCCGGCAAGAGTTGCCCTAGTGGAGCTACGCCAAATGTTCCACATTGTGGTAAACGGCTGTCGCGATGTGAAGATTCAAGGAGTGAAAGTCTCTGCTGCTGGCAACAGTCCAAATACTGACGGCATTCATGTACAATTGTCATCTGGAGTTACAATCTTGAACTCTAAAATTAGTACCGGTGATGATTGCGTCTCAATAGGTCCTGGCACTACTAATTTGTGGATCGAGAATGTGTTATGTGGCCCTGGACATGGCATCAGTATTGGGAGTTTGGCTAAGGACTTTGAGGAAGCCGGTGTGCAGAATGTGACTGTCAAAACTGTGACTTTTACGGGTACACAAAACGGTGTGAGGATTAAGGCGTGGGGTAGACCAAGCACTGGATTCGTGAAAAGTGTAATTTTCCAACATATCACCATGATCAATGTCCAGAATCCAATCGTAATCGACCAGAATTACTGTCCGAATAACTTAAATTGCCCAGGACAAGTGTCGGGAGTGAAAATTAGCGACATTGTGTATCAGGACATCCACGGAACATCCGCGACACAAGTAGCCCTAAAATTTGATTGTAGCAAGAAGAATCCATGCAGTGGAATAAGATTAGAAGATGTAAAGCTGAGTTACATGGCTCAACCAGCTGAAGCATCTTGTGTAAATGCTGGAGGAACTAGTTTGGGCTTAATTGAGCCCACTAACTGTTTGTTGGTTTAA

Network for GWHGAAZE020933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	80	290	7.40E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.531
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.240
	SRR3591710	White floral bud	0.099
	SRR3591711	White flower	0.128
	SRR3591712	Green floral bud	0.096
	SRR3591713	Yellow flower	0.463
SRP173429	SRR8316895	Juvenile bud stage	0.191
	SRR8316896	Juvenile bud stage	0.119
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.143
	SRR8316900	Third green stage	0.348
	SRR8316901	Third green stage	0.294
	SRR8316898	Complete white stage	0.066
	SRR8316899	Complete white stage	0.179
	SRR8316903	Complete white stage	0.062
	SRR8316902	Silver flowering stage	0.165
	SRR8316904	Silver flowering stage	0.250
	SRR8316905	Silver flowering stage	0.104
	SRR8316906	Gold flowering stage	0.372
	SRR8316907	Gold flowering stage	0.409
	SRR8316908	Gold flowering stage	0.277
SRP132670	SRR6706286	Control	0.129
	SRR6706287	Light intensity 50%	0.148
	SRR6706288	Light intensity 20%	0.242
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.357
	CNS0095593	Slightly white alabastrum(diploid) 2	0.401
	CNS0095594	Slightly white alabastrum(diploid) 3	0.006
	CNS0095595	Whole white alabastrum(diploid) 2	0.109
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.017
	CNS0095599	Silvery flower (diploied) 2	0.057
	CNS0095600	Silvery flower (diploied) 3	0.323
	CNS0095601	Golden flower (diploid) 1	0.019
	CNS0095602	Golden flower (diploid) 2	0.677
	CNS0095603	Golden flower (diploid) 3	0.291
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.077
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.082
	CNS0095614	Golden flower (tetraploid) 2	0.261
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.388
	CRR073298	Stem 2	0.147
	CRR073299	Stem 3	0.121
	CRR073300	Leaf 1	0.646
	CRR073301	Leaf 2	0.140
	CRR073302	Leaf 3	0.028
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.272
	CRR073306	Third green 1	0.020
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.003
	CRR073311	Second white 3	0.052
	CRR073312	Silver flowering 1	0.098
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.082
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.376
	CRR073320	Tawny withering 3	0.071