Gene detail

Detail information of GWHGAAZE020945

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008227252.1	4.4032E-165	PREDICTED: polygalacturonase-like [Prunus mume]
COG	YP_001179193.1	4E-15	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|P48979\|PGLR_PRUPE	9E-156	Polygalacturonase (Precursor)
trEMBL	tr\|A0A068UIN7\|A0A068UIN7_COFCA	2E-162	Coffea canephora DH200=94 genomic scaffold, scaffold_30 {ECO:0000313\|EMBL:CDP08137.1}
TAIR10	AT2G43870.1	2E-112	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	27889221	27890794	+
GWHAAZE00000006	mRNA	27889221	27890794	+
GWHAAZE00000006	exon	27889221	27889658	+
GWHAAZE00000006	exon	27890055	27890242	+
GWHAAZE00000006	exon	27890343	27890476	+
GWHAAZE00000006	exon	27890565	27890794	+
GWHAAZE00000006	CDS	27889221	27889658	+
GWHAAZE00000006	CDS	27890055	27890242	+
GWHAAZE00000006	CDS	27890343	27890476	+
GWHAAZE00000006	CDS	27890565	27890794	+

Transcript Sequence
>GWHTAAZE020969 ATGATGAAGTCCATGAGTTTCCTTGCTCTTACAATAACTTTCATCTTCTTCAACAATTCGTTAGCAACCGCAGTTACCTACAATGTGGTCGATTTAGGAGCCAAGCGAGACGGCAAGACAGACTCCACAAAATCATTCGTAACTGCGTGGGCCACAGTTTGTGGGTCAATGAAGCCAGCCATTATATACGTGCCTACTGGAAGGTACTTGATTCAAAGCCTACATTTTCGCGGCCAATGTAATAATAGTGCCATAACCATCCGCATTGATGGGACCCTCGTGGCTCCTTCGGATTATGGGGTTATAGGGAACGCGGGGAATTGGTTATTGTTTGAGGGAGTGAGTGGTGTTACGGTTCGCGGTGGCATTCTTGATGGTCAAGGTACTGGCTTGTGGGCTTGCAAGGCCTCCGGCAAGAGTTGCCCTAGTGGAGCTACGATTCAAGGAGTGAAAGTCTCTGCTGCTGGCAACAGTCCAAATACTGACGGCATTCATGTACAATTGTCATCTGGAGTTACAATCTTGAACTCTAAAATTAGTACCGGTGATGATTGCGTCTCAATAGGTCCTGGCACTACTAATTTGTGGATCGAGAATGTGTTATGTGGCCCTGGACATGGCATCAGTATTGGGAGTTTGGCTAAGGACTTTGAGGAAGCCGGTGTGCAGAATGTGACTGTCAAAACTGTGACTTTTACGGGTACACAAAACGGTGTGAGGATTAAGGAGTGGGGTAGACCAAGCACTGGATTCGTGGAAAGACAAGTGTCGGGAGTGAAAATTAGCGACATTGTGTATCAGGACATCCACGGAACATCCGCGACACAAGTAGCCCTAAAATTTGATTGTAGCAAGAAGAATCCATGCAGTGGAATAAGATTAGAAGATGTAAAGCTGAGTTACATGGCTCAACCAGCTGAAGCATCTTGTGTAAATGCTGGAGGAACTAGTTTGGGCTTAATTGAGCCCACTAACTGTTTGTTGGTTTAA

Network for GWHGAAZE020945

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	54	138	2.10E-06
PF00295.18	Glyco_hydro_28	144	250	2.50E-35
PF00295.18	Glyco_hydro_28	254	313	6.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.262
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.647
	SRR3591710	White floral bud	0.010
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.001
	SRR3591713	Yellow flower	0.645
SRP173429	SRR8316895	Juvenile bud stage	0.212
	SRR8316896	Juvenile bud stage	0.375
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.169
	SRR8316900	Third green stage	0.495
	SRR8316901	Third green stage	0.407
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.240
	SRR8316903	Complete white stage	0.225
	SRR8316902	Silver flowering stage	0.358
	SRR8316904	Silver flowering stage	0.397
	SRR8316905	Silver flowering stage	0.275
	SRR8316906	Gold flowering stage	0.695
	SRR8316907	Gold flowering stage	0.912
	SRR8316908	Gold flowering stage	0.232
SRP132670	SRR6706286	Control	0.174
	SRR6706287	Light intensity 50%	0.220
	SRR6706288	Light intensity 20%	0.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.588
	CNS0095593	Slightly white alabastrum(diploid) 2	0.327
	CNS0095594	Slightly white alabastrum(diploid) 3	0.088
	CNS0095595	Whole white alabastrum(diploid) 2	0.277
	CNS0095596	Whole white alabastrum(diploid) 3	0.214
	CNS0095597	Whole white alabastrum(diploid) 4	0.194
	CNS0095598	Silvery flower (diploied) 1	0.010
	CNS0095599	Silvery flower (diploied) 2	0.038
	CNS0095600	Silvery flower (diploied) 3	0.154
	CNS0095601	Golden flower (diploid) 1	1.012
	CNS0095602	Golden flower (diploid) 2	0.463
	CNS0095603	Golden flower (diploid) 3	0.502
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.029
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.036
	CNS0095612	Silvery flower (tetraploid) 3	0.091
	CNS0095613	Golden flower (tetraploid) 1	0.749
	CNS0095614	Golden flower (tetraploid) 2	0.321
	CNS0095615	Golden flower (tetraploid) 3	0.062
CRA001975	CRR073297	Stem 1	0.168
	CRR073298	Stem 2	0.382
	CRR073299	Stem 3	0.009
	CRR073300	Leaf 1	0.369
	CRR073301	Leaf 2	0.538
	CRR073302	Leaf 3	0.073
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.207
	CRR073306	Third green 1	0.069
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.199
	CRR073312	Silver flowering 1	0.096
	CRR073313	Silver flowering 2	0.025
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.119
	CRR073316	Gold flowering 2	0.067
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.277
	CRR073319	Tawny withering 2	0.619
	CRR073320	Tawny withering 3	0.077