Gene detail

Detail information of GWHGAAZE020951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074001.1	0	PREDICTED: ankyrin repeat-containing protein At5g02620 [Sesamum indicum]
COG	YP_001957498.1	3E-23	hypothetical protein Aasi_0340
Swissprot	tr\|Q6AWW5\|Y5262_ARATH	1E-166	Ankyrin repeat-containing protein At5g02620
trEMBL	tr\|K4DHE0\|K4DHE0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g096670.1.1}
TAIR10	AT2G31820.1	0	Ankyrin repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	28180922	28186382	+
GWHAAZE00000006	mRNA	28180922	28186382	+
GWHAAZE00000006	exon	28180922	28181369	+
GWHAAZE00000006	exon	28182684	28183093	+
GWHAAZE00000006	exon	28185513	28186382	+
GWHAAZE00000006	CDS	28180922	28181369	+
GWHAAZE00000006	CDS	28182684	28183093	+
GWHAAZE00000006	CDS	28185513	28186382	+

Transcript Sequence
>GWHTAAZE020975 ATGGAGAAACAACCGAGTTTTAAAGGGGCGATGGAGAAGCAACAGAGTTTTCGAGGGGTGATGGAGAAGCAAAAGAGTTTTCGAGGGCTAATGGAGAAGCAGAAGAGTTTTCGGATAGCAATGGAGAGGCAGCTGAGCTTTGGAGGAGAGAGAAAGAAGAGCAAAGACTCGCCCGGTAAACGAGGGGATTCGCAGCTTCATTTGGCTGCTAGAGGAGGGAATTTGAGTAAAGCGAGGGAAATCTTTTCGAAGTTTGATGGGAATGGTATCAAAGATTTGTTAGCGAATCAGAACCAGGAAGGGGAGACTCCTCTCTATGTTGCTGCAGAGAATGGGCATGCGCTTGCTGTTGCGGAGTTTTTGAAACATTTGGACCTGCAAACCGCGTCTATTGCTGCCAATAATGGGTATGATTCGTTTCATGTTGCGGCGAAGCAGGGCCATCTTGAGGTTTTGAAGGAACTTTTGAATAGTTTCCCCAATCTGGTAATGACCACAGATTCGTCAAATTCTACAGCCTTACACACAGCTGCAGCTAACGGACACACTGACGTAGTCAATCTTCTTTTGGAAGCTGATTCTAACCTTGCTAAGATAGCACGCAATAACGGTAAGACAGTGCTCCATACTGCTGCAAGGATGGGCCACTTAGAAGTGGCGAAATCTTTACTAAGCAAAGATCCAAGCATTGGTTTTAGAACCGATAAAAAAGGCCAAACAGCACTCCACATGGCAGTTAAGGGGCAAAATGTCGATATTGTGCTCGAATTAATCAAACCTGATCCATCGGTAATGAGTTTGGAAGATAGCAAGGGAAATACAGCACTGCATATTGCTACAAAGAAGGGCCGCAATCAGATTGTACAGTGCCTAATATCGGTCGAGGGCATTAACATCAATGCAATCAACAAGGCCGGAGAGACCCCTCTTGACATTGCTGAAAAATTTGGTACGCCAGAACTTTTCACCATCTTAAAAGAAGCAGGGGCCACTCACTCTAAAGACCACGGCAAGCCCCCAAATGCGGCAAAGCAACTCAAGCAAACCGTAAGTGACATAAAGCATGACGTCCAGTCCCAAATCCAACAGACTCGCCAAACCGGCTTTAGGGTACGTAAAATCGCTAAGAAAGTTAAAAAGCTCCACATTAGTGGCCTCAACAATGCTATAAACTCGGCTACTGTTGTTGCTGTCCTCATTGCCACTGTAGCTTTTGCAGCCATTTTCACTGTCCCGGGCCAATATGTAGAGGATAAAACAGATGGGTTTTCTCTCGGTCAAGCCCACATAGCCAAAAATGCAGCTTTTATCATCTTCTTTTTGTTCGATAGTATGGCCTTGTTCATTTCACTTGCTGTCGTTGTAGTACAAACGTCTGTGGTGGTGATAGAGGAGAAAGCGAAGAAGCAACTCATGTTTGTGATAAACAAGCTTATGTGGTTGGCTTGTCTTTTCATTTCTATTGCCTTCATTTCACTCACTTATGTAGTGGTGGGGGTCCACGAGAGATGGCTTGCGGTTTACGCAACGGTGATTGGGGCTTCTATCATGCTTACAACTATTGGGTCGATGTGCTATTGCGTTGTTCAGCATAGGTTGGAAGAGTCAAAGTTGAGGAACATAAGGAGATCCGAGACCCATTCTCGTTCTCTTTCTATGCCAATGTCTGTCGTGGCCTCAGATCCGGAGATTGGGAACGAAAAGTATAAGAGAATGTACGCGGTTTAA

Network for GWHGAAZE020951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0114
CFinderModule0293

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	140	228	1.40E-17
PF13857.7	Ank_5	268	313	5.80E-08
PF13962.7	PGG	385	497	1.30E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.747
	SRR3591706	second leaf	20.421
	SRR3591707	mature leaf	37.055
	SRR3591708	Shoot apex	36.163
	SRR3591709	Stem	81.452
	SRR3591710	White floral bud	85.047
	SRR3591711	White flower	86.375
	SRR3591712	Green floral bud	64.195
	SRR3591713	Yellow flower	86.184
SRP173429	SRR8316895	Juvenile bud stage	20.137
	SRR8316896	Juvenile bud stage	31.560
	SRR8316897	Juvenile bud stage	13.075
	SRR8316894	Third green stage	15.842
	SRR8316900	Third green stage	44.096
	SRR8316901	Third green stage	41.481
	SRR8316898	Complete white stage	30.634
	SRR8316899	Complete white stage	80.132
	SRR8316903	Complete white stage	55.979
	SRR8316902	Silver flowering stage	35.832
	SRR8316904	Silver flowering stage	57.815
	SRR8316905	Silver flowering stage	31.896
	SRR8316906	Gold flowering stage	108.110
	SRR8316907	Gold flowering stage	101.682
	SRR8316908	Gold flowering stage	120.653
SRP132670	SRR6706286	Control	70.978
	SRR6706287	Light intensity 50%	71.087
	SRR6706288	Light intensity 20%	73.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.687
	CNS0095593	Slightly white alabastrum(diploid) 2	25.384
	CNS0095594	Slightly white alabastrum(diploid) 3	27.193
	CNS0095595	Whole white alabastrum(diploid) 2	23.907
	CNS0095596	Whole white alabastrum(diploid) 3	22.887
	CNS0095597	Whole white alabastrum(diploid) 4	30.405
	CNS0095598	Silvery flower (diploied) 1	31.347
	CNS0095599	Silvery flower (diploied) 2	32.999
	CNS0095600	Silvery flower (diploied) 3	96.953
	CNS0095601	Golden flower (diploid) 1	40.603
	CNS0095602	Golden flower (diploid) 2	95.628
	CNS0095603	Golden flower (diploid) 3	99.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.466
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.279
	CNS0095610	Silvery flower (tetraploid) 1	66.754
	CNS0095611	Silvery flower (tetraploid) 2	63.653
	CNS0095612	Silvery flower (tetraploid) 3	68.540
	CNS0095613	Golden flower (tetraploid) 1	45.181
	CNS0095614	Golden flower (tetraploid) 2	73.729
	CNS0095615	Golden flower (tetraploid) 3	111.298
CRA001975	CRR073297	Stem 1	71.377
	CRR073298	Stem 2	75.082
	CRR073299	Stem 3	82.125
	CRR073300	Leaf 1	93.438
	CRR073301	Leaf 2	79.507
	CRR073302	Leaf 3	75.234
	CRR073303	Juvenile bud 1	92.608
	CRR073304	Juvenile bud 2	96.545
	CRR073305	Juvenile bud 3	124.287
	CRR073306	Third green 1	85.910
	CRR073307	Third green 2	77.867
	CRR073308	Third green 3	87.547
	CRR073309	Second white 1	105.006
	CRR073310	Second white 2	123.599
	CRR073311	Second white 3	118.534
	CRR073312	Silver flowering 1	104.431
	CRR073313	Silver flowering 2	98.155
	CRR073314	Silver flowering 3	85.659
	CRR073315	Gold flowering 1	48.307
	CRR073316	Gold flowering 2	73.187
	CRR073317	Gold flowering 3	43.862
	CRR073318	Tawny withering 1	63.728
	CRR073319	Tawny withering 2	51.545
	CRR073320	Tawny withering 3	59.608