Detail information of GWHGAAZE020955


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010261595.12.0592E-154PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like isoform X1 [Nelumbo nucifera]
COGYP_003251048.15E-83dihydrodipicolinate reductase
Swissprottr|Q8LB01|DAPB2_ARATH5E-1504-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (Precursor)
trEMBLtr|F6HB41|F6HB41_VITVI3E-154Putative uncharacterized protein {ECO:0000313|EMBL:CCB49428.1}
TAIR10AT3G59890.11E-120Dihydrodipicolinate reductase, bacterial/plant

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene2836767228385163-
GWHAAZE00000006mRNA2836767228385163-
GWHAAZE00000006exon2836767228367772-
GWHAAZE00000006exon2836934328369430-
GWHAAZE00000006exon2836981328369868-
GWHAAZE00000006exon2837060928370710-
GWHAAZE00000006exon2837930928379383-
GWHAAZE00000006exon2837948228379615-
GWHAAZE00000006exon2838232028382557-
GWHAAZE00000006exon2838481428385163-
GWHAAZE00000006five_prime_UTR2838506628385163-
GWHAAZE00000006CDS2838481428385065-
GWHAAZE00000006CDS2838232028382557-
GWHAAZE00000006CDS2837948228379615-
GWHAAZE00000006CDS2837930928379383-
GWHAAZE00000006CDS2837060928370710-
GWHAAZE00000006CDS2836981328369868-
GWHAAZE00000006CDS2836934328369430-
GWHAAZE00000006CDS2836770428367772-
GWHAAZE00000006three_prime_UTR2836767228367703-
Transcript Sequence

Network for GWHGAAZE020955

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01113.21DapB_N832052.60E-17
PF05173.15DapB_C2093311.10E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00215dapB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Lysine biosynthesismap00300
Monobactam biosynthesismap00261

Gene Ontology

GO term OntologyName
GO:0009089biological_processlysine biosynthetic process via diaminopimelate
GO:0055114biological_processoxidation-reduction process
GO:0008839molecular_function4-hydroxy-tetrahydrodipicolinate reductase
GO:0070402molecular_functionNADPH binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.985
SRR3591706second leaf17.922
SRR3591707mature leaf9.273
SRR3591708Shoot apex35.549
SRR3591709Stem8.123
SRR3591710White floral bud11.401
SRR3591711White flower14.482
SRR3591712Green floral bud26.237
SRR3591713Yellow flower13.376
SRP173429 SRR8316895Juvenile bud stage 21.206
SRR8316896Juvenile bud stage 25.798
SRR8316897Juvenile bud stage 16.348
SRR8316894Third green stage 12.908
SRR8316900Third green stage 47.565
SRR8316901Third green stage 41.937
SRR8316898Complete white stage 9.881
SRR8316899Complete white stage 33.231
SRR8316903Complete white stage 9.774
SRR8316902Silver flowering stage4.317
SRR8316904Silver flowering stage5.236
SRR8316905Silver flowering stage2.456
SRR8316906Gold flowering stage 9.468
SRR8316907Gold flowering stage 9.747
SRR8316908Gold flowering stage 9.191
SRP132670SRR6706286Control26.116
SRR6706287Light intensity 50%30.844
SRR6706288Light intensity 20%33.582
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.249
CNS0095593Slightly white alabastrum(diploid) 221.525
CNS0095594Slightly white alabastrum(diploid) 320.100
CNS0095595Whole white alabastrum(diploid) 219.817
CNS0095596Whole white alabastrum(diploid) 326.151
CNS0095597Whole white alabastrum(diploid) 421.260
CNS0095598Silvery flower (diploied) 18.909
CNS0095599Silvery flower (diploied) 211.720
CNS0095600Silvery flower (diploied) 39.795
CNS0095601Golden flower (diploid) 16.206
CNS0095602Golden flower (diploid) 27.016
CNS0095603Golden flower (diploid) 37.430
CNS0095604Slightly white alabastrum(tetraploid) 111.476
CNS0095605Slightly white alabastrum(tetraploid) 210.632
CNS0095606Slightly white alabastrum(tetraploid) 312.475
CNS0095607Whole white alabastrum(tetraploid) 13.550
CNS0095608Whole white alabastrum(tetraploid) 27.508
CNS0095609Whole white alabastrum(tetraploid) 320.430
CNS0095610Silvery flower (tetraploid) 15.488
CNS0095611Silvery flower (tetraploid) 25.203
CNS0095612Silvery flower (tetraploid) 34.265
CNS0095613Golden flower (tetraploid) 11.357
CNS0095614Golden flower (tetraploid) 23.344
CNS0095615Golden flower (tetraploid) 30.958
CRA001975CRR073297Stem 118.367
CRR073298Stem 217.610
CRR073299Stem 315.846
CRR073300Leaf 116.604
CRR073301Leaf 219.544
CRR073302Leaf 326.290
CRR073303Juvenile bud 120.494
CRR073304Juvenile bud 217.341
CRR073305Juvenile bud 311.617
CRR073306Third green 12.872
CRR073307Third green 21.250
CRR073308Third green 32.874
CRR073309Second white 13.549
CRR073310Second white 22.258
CRR073311Second white 32.522
CRR073312Silver flowering 11.963
CRR073313Silver flowering 21.356
CRR073314Silver flowering 31.885
CRR073315Gold flowering 116.813
CRR073316Gold flowering 225.554
CRR073317Gold flowering 310.863
CRR073318Tawny withering 15.813
CRR073319Tawny withering 29.151
CRR073320Tawny withering 38.474