Gene detail

Detail information of GWHGAAZE020975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071327.1	2.15691E-29	PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q41328\|PTI1_SOLLC	5E-32	Pto-interacting protein 1
trEMBL	tr\|A0A068TR65\|A0A068TR65_COFCA	4E-29	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98701.1}
TAIR10	AT3G17410.1	1E-26	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	29199657	29201912	+
GWHAAZE00000006	mRNA	29199657	29201912	+
GWHAAZE00000006	exon	29199657	29199749	+
GWHAAZE00000006	exon	29199988	29200053	+
GWHAAZE00000006	exon	29200223	29200349	+
GWHAAZE00000006	exon	29200482	29200572	+
GWHAAZE00000006	exon	29201331	29201448	+
GWHAAZE00000006	exon	29201558	29201644	+
GWHAAZE00000006	exon	29201820	29201912	+
GWHAAZE00000006	CDS	29199657	29199749	+
GWHAAZE00000006	CDS	29199988	29200053	+
GWHAAZE00000006	CDS	29200223	29200349	+
GWHAAZE00000006	CDS	29200482	29200572	+
GWHAAZE00000006	CDS	29201331	29201448	+
GWHAAZE00000006	CDS	29201558	29201644	+
GWHAAZE00000006	CDS	29201820	29201912	+

Transcript Sequence
>GWHTAAZE020999 ATGTCTGAGGTGGTGGCGGTTGAGTTTCCTTTTACATTCCAAGAGAGAAGGGATTATTCTATGGCAGAGGAGTATGCTTTTAATGATGATGAGCTAGATGAGTTGAAGGAAATAGCAGACATCTGTGGTACGCAGGCTTTGATTTGTGAGGGTTCAATGGTTTCTACGGCGTCAATGATTAAATATGAAGAAGTGGTTGAGCTACTTAGTTGTTGTGTGGATGGGTTTCTCCGTGTCCTTGCCAATGAGTATGCTCCAAATGGATCTCTTCACGACCTTCTTCATGGACGAAAAGGTGTTAATGGTGCGCAGCCAGGTCTAGCTCTATCATGGTCCCAAAGAGTTAAAATTGCTCTTGGAGCTGTGAAAGAACTTGAATATAGAATGACTGGACAATTTTGTTTGGCTCGTTTACAGCCCTACATGGAACTATTAACTGGGTGTAAACCTGTTGATCATACATTGCCACACAGACAGCAGGATCTGGTGACCTGGGCAACCCCAAAACTTAGTGAAGATAGTGCGAATGTGTGTATTGACCCTAGATTGTGTGGAGAATACCCTCCCAAAGCATCTGCAAAGATGGCTGCCGTTGCAGCCTTGTGCCCGCAATATGAGGTTGATTTCCATCTGAACATGGGAATTGTAGTTAAAGCCCCTCCTAACTTCTGCTGA

Network for GWHGAAZE020975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0221

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.834
	SRR3591706	second leaf	13.874
	SRR3591707	mature leaf	18.615
	SRR3591708	Shoot apex	15.121
	SRR3591709	Stem	16.699
	SRR3591710	White floral bud	8.928
	SRR3591711	White flower	11.631
	SRR3591712	Green floral bud	12.588
	SRR3591713	Yellow flower	4.932
SRP173429	SRR8316895	Juvenile bud stage	3.327
	SRR8316896	Juvenile bud stage	4.026
	SRR8316897	Juvenile bud stage	2.606
	SRR8316894	Third green stage	4.033
	SRR8316900	Third green stage	7.183
	SRR8316901	Third green stage	7.701
	SRR8316898	Complete white stage	3.264
	SRR8316899	Complete white stage	12.455
	SRR8316903	Complete white stage	7.020
	SRR8316902	Silver flowering stage	2.707
	SRR8316904	Silver flowering stage	4.061
	SRR8316905	Silver flowering stage	1.131
	SRR8316906	Gold flowering stage	4.840
	SRR8316907	Gold flowering stage	7.558
	SRR8316908	Gold flowering stage	7.178
SRP132670	SRR6706286	Control	11.712
	SRR6706287	Light intensity 50%	12.457
	SRR6706288	Light intensity 20%	13.479
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.292
	CNS0095593	Slightly white alabastrum(diploid) 2	7.274
	CNS0095594	Slightly white alabastrum(diploid) 3	5.567
	CNS0095595	Whole white alabastrum(diploid) 2	6.068
	CNS0095596	Whole white alabastrum(diploid) 3	4.324
	CNS0095597	Whole white alabastrum(diploid) 4	5.870
	CNS0095598	Silvery flower (diploied) 1	5.987
	CNS0095599	Silvery flower (diploied) 2	2.556
	CNS0095600	Silvery flower (diploied) 3	5.969
	CNS0095601	Golden flower (diploid) 1	4.074
	CNS0095602	Golden flower (diploid) 2	4.594
	CNS0095603	Golden flower (diploid) 3	3.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.451
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.914
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.741
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.105
	CNS0095610	Silvery flower (tetraploid) 1	6.266
	CNS0095611	Silvery flower (tetraploid) 2	5.616
	CNS0095612	Silvery flower (tetraploid) 3	6.162
	CNS0095613	Golden flower (tetraploid) 1	4.238
	CNS0095614	Golden flower (tetraploid) 2	6.395
	CNS0095615	Golden flower (tetraploid) 3	5.413
CRA001975	CRR073297	Stem 1	10.789
	CRR073298	Stem 2	9.622
	CRR073299	Stem 3	4.122
	CRR073300	Leaf 1	10.575
	CRR073301	Leaf 2	12.315
	CRR073302	Leaf 3	5.672
	CRR073303	Juvenile bud 1	3.458
	CRR073304	Juvenile bud 2	1.308
	CRR073305	Juvenile bud 3	5.138
	CRR073306	Third green 1	1.194
	CRR073307	Third green 2	0.658
	CRR073308	Third green 3	0.210
	CRR073309	Second white 1	0.947
	CRR073310	Second white 2	0.661
	CRR073311	Second white 3	0.961
	CRR073312	Silver flowering 1	0.280
	CRR073313	Silver flowering 2	0.228
	CRR073314	Silver flowering 3	0.033
	CRR073315	Gold flowering 1	0.861
	CRR073316	Gold flowering 2	5.974
	CRR073317	Gold flowering 3	0.237
	CRR073318	Tawny withering 1	4.127
	CRR073319	Tawny withering 2	7.664
	CRR073320	Tawny withering 3	4.657