Gene detail

Detail information of GWHGAAZE021014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099683.1	1.1664E-106	PREDICTED: NAC domain-containing protein 2-like [Sesamum indicum]
Swissprot	tr\|Q39013\|NAC2_ARATH	1E-88	NAC domain-containing protein 2
trEMBL	tr\|F6H4F0\|F6H4F0_VITVI	6E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47161.1}
TAIR10	AT5G08790.1	6E-71	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	31178871	31180313	-
GWHAAZE00000006	mRNA	31178871	31180313	-
GWHAAZE00000006	exon	31178871	31179356	-
GWHAAZE00000006	exon	31179590	31179870	-
GWHAAZE00000006	exon	31180250	31180313	-
GWHAAZE00000006	CDS	31180250	31180313	-
GWHAAZE00000006	CDS	31179590	31179870	-
GWHAAZE00000006	CDS	31178871	31179356	-

Transcript Sequence
>GWHTAAZE021038 TCGATTGCGGTTCCGATTATTGCCGAGATTGATCTTTACAAGTTTGATCCATGGCAACTTCCAGGAATGGCAATGTATGGTGAAAAGGAATGGTACTTTTTCTCGCCAAGGGACCGAAAGTACCCCAATGGTTCGCGGCCTAACAGGGCTGCCGGAACAGGGTACTGGAAGGCCACCGGAGCTGATAAGCCGGTGGGTAAACCCAAGACTTTGGGCATTAAAAAGGCGCTAGTGTTCTACGCTGGAAAAGCACCTAAAGGCGTCAAAACAAATTGGATCATGCACGAATATCGCTTAGCTAATGTGGATCGATCCGCTGGTGCCAGAAAGAAAAACAATTCAAGGCTTGATGATTGGGTATTATGTCGAATATACAACAAGAAAGGTATCATAGAGAAGCACTACAATGTGGTGGATAAAACGTTTGACGTACCTGATATGGAAGAAAAGAAACCCGAAATTTCGACATTGGGCTATAATCATGTAAATTTCACAAAAATGCAGCCGCCACAACAACCACCACTACCACCACAGGTAGCACAAACCGTGAATGATAGTGACTACAACTACAATTTTCAAACATCATCATCATCGGAATATTCGACGCAACCGCCGAGGTTAAATGGCTATTCTAGTTCGTCATCAGGGCAAGCGGAGTTGATGTTTGAGAAGGAGGCCGAGGTCCAAAGCGATCCAAAATGGAATAACAATAACAATGATTTTGATTTTGAGCTTGAGCTTAGCAATTACATGGATACATTTGCAGATGATCCTTTTGCACTTCAAACCCAGTATAATGACTACCAGGATTTGTTCTTGTTCAATTGTTGA

Network for GWHGAAZE021014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	5	99	1.70E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.634
	SRR3591706	second leaf	12.139
	SRR3591707	mature leaf	3.301
	SRR3591708	Shoot apex	8.155
	SRR3591709	Stem	20.417
	SRR3591710	White floral bud	10.227
	SRR3591711	White flower	27.183
	SRR3591712	Green floral bud	7.447
	SRR3591713	Yellow flower	31.604
SRP173429	SRR8316895	Juvenile bud stage	53.160
	SRR8316896	Juvenile bud stage	23.543
	SRR8316897	Juvenile bud stage	34.625
	SRR8316894	Third green stage	7.367
	SRR8316900	Third green stage	12.182
	SRR8316901	Third green stage	30.766
	SRR8316898	Complete white stage	1.348
	SRR8316899	Complete white stage	22.742
	SRR8316903	Complete white stage	1.974
	SRR8316902	Silver flowering stage	7.063
	SRR8316904	Silver flowering stage	12.739
	SRR8316905	Silver flowering stage	5.278
	SRR8316906	Gold flowering stage	24.024
	SRR8316907	Gold flowering stage	21.030
	SRR8316908	Gold flowering stage	44.571
SRP132670	SRR6706286	Control	10.463
	SRR6706287	Light intensity 50%	11.923
	SRR6706288	Light intensity 20%	9.694
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.625
	CNS0095593	Slightly white alabastrum(diploid) 2	54.958
	CNS0095594	Slightly white alabastrum(diploid) 3	44.072
	CNS0095595	Whole white alabastrum(diploid) 2	44.070
	CNS0095596	Whole white alabastrum(diploid) 3	5.101
	CNS0095597	Whole white alabastrum(diploid) 4	20.938
	CNS0095598	Silvery flower (diploied) 1	36.344
	CNS0095599	Silvery flower (diploied) 2	89.700
	CNS0095600	Silvery flower (diploied) 3	36.071
	CNS0095601	Golden flower (diploid) 1	74.314
	CNS0095602	Golden flower (diploid) 2	80.134
	CNS0095603	Golden flower (diploid) 3	73.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.088
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.501
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.888
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.141
	CNS0095610	Silvery flower (tetraploid) 1	10.490
	CNS0095611	Silvery flower (tetraploid) 2	3.993
	CNS0095612	Silvery flower (tetraploid) 3	5.611
	CNS0095613	Golden flower (tetraploid) 1	9.491
	CNS0095614	Golden flower (tetraploid) 2	16.705
	CNS0095615	Golden flower (tetraploid) 3	3.645
CRA001975	CRR073297	Stem 1	23.365
	CRR073298	Stem 2	20.702
	CRR073299	Stem 3	13.896
	CRR073300	Leaf 1	42.895
	CRR073301	Leaf 2	62.810
	CRR073302	Leaf 3	17.455
	CRR073303	Juvenile bud 1	14.902
	CRR073304	Juvenile bud 2	25.964
	CRR073305	Juvenile bud 3	27.223
	CRR073306	Third green 1	19.902
	CRR073307	Third green 2	11.902
	CRR073308	Third green 3	11.347
	CRR073309	Second white 1	3.765
	CRR073310	Second white 2	9.711
	CRR073311	Second white 3	9.378
	CRR073312	Silver flowering 1	33.890
	CRR073313	Silver flowering 2	13.185
	CRR073314	Silver flowering 3	11.681
	CRR073315	Gold flowering 1	6.213
	CRR073316	Gold flowering 2	22.846
	CRR073317	Gold flowering 3	12.154
	CRR073318	Tawny withering 1	12.926
	CRR073319	Tawny withering 2	48.818
	CRR073320	Tawny withering 3	16.914