Detail information of GWHGAAZE021018


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEY82696.10(3S)-linalool/(E)-nerolidol synthase [Vitis vinifera]
Swissprottr|P0CV94|NES1_FRAAN0(3S,6E)-nerolidol synthase 1
trEMBLtr|H6WBC5|H6WBC5_VITVI0(3S)-linalool/(E)-nerolidol synthase {ECO:0000313|EMBL:AEY82696.1}
TAIR10AT1G61680.12E-118terpene synthase 14

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3133140731333561-
GWHAAZE00000006mRNA3133140731333561-
GWHAAZE00000006exon3133140731331685-
GWHAAZE00000006exon3133178531332033-
GWHAAZE00000006exon3133213131332269-
GWHAAZE00000006exon3133236431332582-
GWHAAZE00000006exon3133285931333234-
GWHAAZE00000006exon3133331831333561-
GWHAAZE00000006CDS3133331831333561-
GWHAAZE00000006CDS3133285931333234-
GWHAAZE00000006CDS3133236431332582-
GWHAAZE00000006CDS3133213131332269-
GWHAAZE00000006CDS3133178531332033-
GWHAAZE00000006CDS3133140731331685-
Transcript Sequence

Network for GWHGAAZE021018

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0179


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01397.22Terpene_synth141414.40E-38
PF03936.17Terpene_synth_C1854496.40E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14175NES1 Metabolic pathways map01100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0010333molecular_functionterpene synthase activity
GO:0016829molecular_functionlyase activity
GO:0000287molecular_functionmagnesium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf82.054
SRR3591707mature leaf32.341
SRR3591708Shoot apex6.850
SRR3591709Stem0.244
SRR3591710White floral bud48.490
SRR3591711White flower119.753
SRR3591712Green floral bud7.909
SRR3591713Yellow flower132.158
SRP173429 SRR8316895Juvenile bud stage 3.895
SRR8316896Juvenile bud stage 0.777
SRR8316897Juvenile bud stage 1.409
SRR8316894Third green stage 0.051
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.128
SRR8316898Complete white stage 13.839
SRR8316899Complete white stage 12.859
SRR8316903Complete white stage 18.948
SRR8316902Silver flowering stage0.165
SRR8316904Silver flowering stage0.200
SRR8316905Silver flowering stage0.067
SRR8316906Gold flowering stage 0.287
SRR8316907Gold flowering stage 0.726
SRR8316908Gold flowering stage 1.117
SRP132670SRR6706286Control0.323
SRR6706287Light intensity 50%1.538
SRR6706288Light intensity 20%0.507
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.713
CNS0095593Slightly white alabastrum(diploid) 21.028
CNS0095594Slightly white alabastrum(diploid) 30.453
CNS0095595Whole white alabastrum(diploid) 20.222
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.509
CNS0095598Silvery flower (diploied) 11.861
CNS0095599Silvery flower (diploied) 21.859
CNS0095600Silvery flower (diploied) 30.618
CNS0095601Golden flower (diploid) 10.515
CNS0095602Golden flower (diploid) 20.411
CNS0095603Golden flower (diploid) 30.605
CNS0095604Slightly white alabastrum(tetraploid) 10.983
CNS0095605Slightly white alabastrum(tetraploid) 20.512
CNS0095606Slightly white alabastrum(tetraploid) 32.971
CNS0095607Whole white alabastrum(tetraploid) 10.719
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.016
CNS0095610Silvery flower (tetraploid) 13.683
CNS0095611Silvery flower (tetraploid) 24.713
CNS0095612Silvery flower (tetraploid) 32.564
CNS0095613Golden flower (tetraploid) 10.466
CNS0095614Golden flower (tetraploid) 25.787
CNS0095615Golden flower (tetraploid) 30.108
CRA001975CRR073297Stem 10.324
CRR073298Stem 20.528
CRR073299Stem 30.216
CRR073300Leaf 10.089
CRR073301Leaf 20.000
CRR073302Leaf 30.243
CRR073303Juvenile bud 10.005
CRR073304Juvenile bud 218.709
CRR073305Juvenile bud 30.333
CRR073306Third green 10.163
CRR073307Third green 20.050
CRR073308Third green 30.087
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.050
CRR073315Gold flowering 123.216
CRR073316Gold flowering 229.261
CRR073317Gold flowering 322.053
CRR073318Tawny withering 10.056
CRR073319Tawny withering 20.665
CRR073320Tawny withering 30.041