Detail information of GWHGAAZE021118


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650412.10PREDICTED: fanconi-associated nuclease 1 homolog isoform X1 [Vitis vinifera]
COGYP_004086263.11E-16DNA polymerase III subunit epsilon
Swissprottr|Q5SNL7|FAN1_ORYSJ0Fanconi-associated nuclease 1 homolog
trEMBLtr|A0A061EJ21|A0A061EJ21_THECC0Zinc ion binding,nucleic acid binding,hydrolases, putative isoform 1 {ECO:0000313|EMBL:EOY05020.1}
TAIR10AT1G48360.20zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3536816935380563-
GWHAAZE00000006mRNA3536816935380563-
GWHAAZE00000006exon3536816935368492-
GWHAAZE00000006exon3536929335369712-
GWHAAZE00000006exon3537052635370762-
GWHAAZE00000006exon3537154835371818-
GWHAAZE00000006exon3537289435373120-
GWHAAZE00000006exon3537319235373332-
GWHAAZE00000006exon3537366835373755-
GWHAAZE00000006exon3537384035373910-
GWHAAZE00000006exon3537511235375230-
GWHAAZE00000006exon3537534035375414-
GWHAAZE00000006exon3537817735378239-
GWHAAZE00000006exon3537832535378589-
GWHAAZE00000006exon3537874635378850-
GWHAAZE00000006exon3537893735379508-
GWHAAZE00000006exon3538021235380380-
GWHAAZE00000006exon3538047135380563-
GWHAAZE00000006CDS3538047135380563-
GWHAAZE00000006CDS3538021235380380-
GWHAAZE00000006CDS3537893735379508-
GWHAAZE00000006CDS3537874635378850-
GWHAAZE00000006CDS3537832535378589-
GWHAAZE00000006CDS3537817735378239-
GWHAAZE00000006CDS3537534035375414-
GWHAAZE00000006CDS3537511235375230-
GWHAAZE00000006CDS3537384035373910-
GWHAAZE00000006CDS3537366835373755-
GWHAAZE00000006CDS3537319235373332-
GWHAAZE00000006CDS3537289435373120-
GWHAAZE00000006CDS3537154835371818-
GWHAAZE00000006CDS3537052635370762-
GWHAAZE00000006CDS3536929335369712-
GWHAAZE00000006CDS3536816935368492-
Transcript Sequence

Network for GWHGAAZE021118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08797.12HIRAN2413223.00E-13
PF08774.12VRR_NUC8599738.00E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15363FAN1, MTMR15 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
GO:0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
GO:0004518molecular_functionnuclease activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.143
SRR3591706second leaf1.279
SRR3591707mature leaf1.643
SRR3591708Shoot apex4.315
SRR3591709Stem1.944
SRR3591710White floral bud1.390
SRR3591711White flower1.209
SRR3591712Green floral bud1.435
SRR3591713Yellow flower1.655
SRP173429 SRR8316895Juvenile bud stage 1.673
SRR8316896Juvenile bud stage 2.685
SRR8316897Juvenile bud stage 1.117
SRR8316894Third green stage 1.145
SRR8316900Third green stage 2.345
SRR8316901Third green stage 2.182
SRR8316898Complete white stage 0.647
SRR8316899Complete white stage 2.870
SRR8316903Complete white stage 1.565
SRR8316902Silver flowering stage0.778
SRR8316904Silver flowering stage1.120
SRR8316905Silver flowering stage0.480
SRR8316906Gold flowering stage 1.742
SRR8316907Gold flowering stage 1.445
SRR8316908Gold flowering stage 2.009
SRP132670SRR6706286Control1.818
SRR6706287Light intensity 50%2.011
SRR6706288Light intensity 20%1.898
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.752
CNS0095593Slightly white alabastrum(diploid) 21.533
CNS0095594Slightly white alabastrum(diploid) 31.417
CNS0095595Whole white alabastrum(diploid) 21.602
CNS0095596Whole white alabastrum(diploid) 32.310
CNS0095597Whole white alabastrum(diploid) 41.410
CNS0095598Silvery flower (diploied) 11.725
CNS0095599Silvery flower (diploied) 21.742
CNS0095600Silvery flower (diploied) 32.502
CNS0095601Golden flower (diploid) 11.368
CNS0095602Golden flower (diploid) 21.835
CNS0095603Golden flower (diploid) 31.924
CNS0095604Slightly white alabastrum(tetraploid) 13.661
CNS0095605Slightly white alabastrum(tetraploid) 22.751
CNS0095606Slightly white alabastrum(tetraploid) 34.812
CNS0095607Whole white alabastrum(tetraploid) 13.329
CNS0095608Whole white alabastrum(tetraploid) 23.513
CNS0095609Whole white alabastrum(tetraploid) 33.728
CNS0095610Silvery flower (tetraploid) 13.848
CNS0095611Silvery flower (tetraploid) 24.593
CNS0095612Silvery flower (tetraploid) 33.979
CNS0095613Golden flower (tetraploid) 11.581
CNS0095614Golden flower (tetraploid) 23.630
CNS0095615Golden flower (tetraploid) 32.304
CRA001975CRR073297Stem 11.494
CRR073298Stem 22.381
CRR073299Stem 31.605
CRR073300Leaf 11.940
CRR073301Leaf 21.933
CRR073302Leaf 30.962
CRR073303Juvenile bud 11.070
CRR073304Juvenile bud 21.014
CRR073305Juvenile bud 31.827
CRR073306Third green 10.326
CRR073307Third green 20.360
CRR073308Third green 30.263
CRR073309Second white 10.463
CRR073310Second white 20.720
CRR073311Second white 30.459
CRR073312Silver flowering 10.722
CRR073313Silver flowering 20.880
CRR073314Silver flowering 30.549
CRR073315Gold flowering 10.899
CRR073316Gold flowering 21.124
CRR073317Gold flowering 30.415
CRR073318Tawny withering 11.072
CRR073319Tawny withering 21.491
CRR073320Tawny withering 30.829